Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.6e-286 988.8 534 100.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.7e-65 254.6 628 38.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 6.8e-59 232.6 526 40.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 6.9e-51 206.1 454 39.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.1e-47 194.5 621 34.9
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.3e-46 191.0 552 36.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-43 182.2 528 37.1
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 5.3e-43 179.9 509 34.4
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.4e-42 177.2 342 39.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.8e-42 176.4 531 35.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.9e-42 175.6 615 32.2
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.4e-41 172.9 490 32.9
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.4e-40 169.9 344 39.8
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.2e-39 168.7 359 38.2
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.5e-39 167.2 444 35.6
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.3e-38 164.5 500 32.4
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 8.7e-38 162.5 517 33.5
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 8.7e-38 162.5 669 32.6
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.6e-37 159.8 356 37.9
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 7.4e-37 159.5 517 31.7
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 4.8e-36 156.8 544 34.9
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.4e-35 155.2 345 40.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.1e-35 154.1 572 30.8
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 2.9e-33 147.5 351 36.8
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 8.4e-33 146.0 542 31.5
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.4e-32 145.2 581 32.5
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.4e-32 145.2 533 32.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.4e-32 145.2 570 29.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.9e-32 144.8 444 31.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.2e-32 143.7 339 36.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 7.1e-32 142.9 567 30.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 9.3e-32 142.5 518 32.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 9.3e-32 142.5 545 29.2
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-31 141.7 517 32.1
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.6e-31 141.7 538 32.7
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.7e-31 141.0 543 29.3
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 2.7e-31 141.0 640 29.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 4.6e-31 140.2 422 33.2
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 3.9e-30 137.1 555 31.0
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 8.7e-30 136.0 555 30.5
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.5e-29 135.2 323 35.9
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.5e-29 134.4 424 30.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.5e-29 134.4 281 38.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.3e-29 134.0 555 30.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 5.7e-29 133.3 567 30.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 5.7e-29 133.3 567 30.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 9.6e-29 132.5 578 28.5
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.6e-28 131.7 565 30.6
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.1e-28 131.3 322 36.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.8e-28 131.0 608 30.6
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.8e-28 130.2 609 30.2
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.8e-28 130.2 436 29.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 6.2e-28 129.8 615 30.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 8.2e-28 129.4 485 31.1
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 1.1e-27 129.0 303 36.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-27 128.6 553 29.1
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.8e-27 128.3 565 28.8
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.9e-27 126.3 554 28.5
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-26 125.6 640 28.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.2e-26 125.6 316 36.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.2e-26 125.6 663 29.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.0e-26 124.8 613 28.4
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.0e-26 124.8 358 33.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.0e-26 124.8 462 29.4
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.0e-25 122.5 429 35.9
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.7e-25 121.7 472 28.8
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.7e-25 121.7 227 41.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.7e-25 121.7 505 30.1
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.9e-25 120.9 489 28.0
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.9e-25 120.9 540 29.3
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 5.5e-24 116.7 386 30.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 7.1e-24 116.3 666 29.3
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.1e-24 116.3 604 28.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 9.3e-24 115.9 578 30.3
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-23 115.5 218 39.9
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.6e-23 113.6 201 40.8
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.6e-23 113.6 611 29.1
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-23 113.6 231 40.3
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.0e-22 112.5 512 28.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.8e-22 111.7 400 28.8
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.8e-22 111.7 471 30.4
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.3e-22 111.3 299 34.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.1e-22 110.2 230 39.1
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 6.7e-22 109.8 204 43.6
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.7e-22 109.4 427 31.1
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.1e-21 109.0 505 27.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 5.7e-21 106.7 264 39.8
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 9.7e-21 105.9 316 33.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.3e-20 105.5 563 28.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.3e-20 105.5 260 36.2
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.3e-20 105.5 171 45.0
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.2e-20 104.8 356 30.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.7e-20 104.0 214 41.6
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 8.2e-20 102.8 644 28.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.1e-19 102.4 210 38.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.4e-19 101.3 371 28.8
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.1e-19 100.9 325 33.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.1e-19 100.5 548 28.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.3e-19 100.1 325 33.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.3e-19 100.1 165 45.5
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 6.9e-19 99.8 381 28.6
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 9.0e-19 99.4 284 34.5
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.0e-19 99.4 325 33.2
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.9e-18 96.7 296 31.4
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.7e-18 96.3 232 34.9
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.0e-17 95.9 596 27.3
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.3e-17 95.5 260 32.3
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.2e-17 94.7 490 28.4
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 2.9e-17 94.4 405 26.4
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-17 94.0 278 33.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 6.5e-17 93.2 229 37.6
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 6.5e-17 93.2 158 43.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 8.5e-17 92.8 405 26.9
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.4e-16 92.0 233 35.6
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.2e-16 90.5 376 27.7
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.2e-16 89.7 335 28.7
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 9.4e-16 89.4 243 34.6
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.2e-15 89.0 408 28.2
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.6e-15 88.6 253 34.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.1e-15 88.2 451 29.9
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 4.6e-15 87.0 155 39.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.8e-14 85.1 145 42.8
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.5e-13 82.0 701 25.8
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.5e-13 82.0 264 31.8
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.0e-13 81.6 397 26.4
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.3e-13 80.9 716 25.7
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-12 78.2 152 39.5
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 4.8e-12 77.0 365 30.4
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.2e-12 76.3 406 29.1
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.1e-11 75.9 172 36.6
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.8e-11 75.1 210 33.3
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.8e-11 75.1 189 34.4
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.4e-11 74.7 119 42.9
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.1e-11 73.9 115 45.2
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.1e-11 72.8 111 44.1
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.2e-10 72.4 166 38.0
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 3.4e-10 70.9 111 43.2
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 5.9e-10 70.1 237 31.2
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 5.9e-10 70.1 373 23.9
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.7e-09 68.6 696 24.9
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 2.2e-09 68.2 670 24.8
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.9e-09 67.8 215 32.1
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 2.9e-09 67.8 76 46.1
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 2.9e-09 67.8 267 30.7
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 5.0e-09 67.0 76 46.1
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 6.5e-09 66.6 213 29.1
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 6.5e-09 66.6 253 29.6
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 6.5e-09 66.6 474 25.5
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.1e-08 65.9 228 31.1
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-08 65.5 76 44.7
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-08 65.5 76 44.7
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-08 65.5 228 33.3
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 2.5e-08 64.7 76 44.7
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 5.5e-08 63.5 413 30.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.4e-08 62.8 113 41.6
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.6e-07 62.0 196 33.2
PGSC0003DMG400030008 Solanum tuberosum HOM05D004189 ORTHO05D004092 3.6e-07 60.8 120 36.7
SGA_v2.0_scaffold113G31729 Striga asiatica HOM05D026728 ORTHO05D004092 7.9e-07 59.7 368 29.1
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.4e-06 58.9 91 36.3
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.4e-06 58.9 226 33.2
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 3.0e-06 57.8 110 38.2
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.0e-06 57.8 103 42.7
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 3.9e-06 57.4 105 32.4
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 5.1e-06 57.0 123 35.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 5.1e-06 57.0 91 38.5
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 8.8e-06 56.2 259 24.3


User provided reference genes

Program Settings