Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.6e-49 199.1 101 100.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 6.9e-37 157.1 101 78.2
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.4e-36 154.8 91 82.4
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 7.6e-36 153.7 104 75.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 3.2e-34 148.3 99 74.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 9.3e-34 146.7 100 76.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.2e-33 146.4 99 73.7
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.6e-33 146.0 100 73.0
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 2.1e-33 145.6 101 75.2
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.6e-33 144.4 99 73.7
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 4.6e-33 144.4 89 78.7
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 7.9e-33 143.7 87 80.5
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.0e-32 143.3 85 78.8
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.3e-32 142.9 104 68.3
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.3e-32 142.9 104 69.2
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.3e-32 142.9 98 70.4
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.3e-32 142.1 99 72.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 3.9e-32 141.4 102 71.6
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 5.1e-32 141.0 95 73.7
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 8.7e-32 140.2 100 71.0
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 8.7e-32 140.2 99 69.7
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.1e-31 139.8 99 71.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.1e-31 139.8 95 72.6
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.1e-31 139.8 95 72.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.5e-31 139.4 95 72.6
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.9e-31 139.0 85 77.6
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.5e-31 138.7 88 76.1
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.3e-31 137.9 99 68.7
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 4.3e-31 137.9 98 70.4
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 5.7e-31 137.5 96 69.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 9.7e-31 136.7 99 67.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.3e-30 136.3 89 73.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.3e-30 136.3 85 74.1
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.3e-30 136.3 94 70.2
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-30 136.0 97 71.1
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.6e-30 136.0 97 69.1
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.6e-30 136.0 96 67.7
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.6e-30 136.0 94 71.3
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.2e-30 135.6 90 73.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.2e-30 135.6 98 67.3
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.2e-30 135.6 100 68.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 4.8e-30 134.4 91 73.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 4.8e-30 134.4 93 73.1
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 6.3e-30 134.0 101 70.3
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 6.3e-30 134.0 99 67.7
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 6.3e-30 134.0 85 74.1
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 6.3e-30 134.0 98 67.3
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 8.2e-30 133.7 97 70.1
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.1e-29 133.3 85 80.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.8e-29 132.5 90 70.0
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 2.4e-29 132.1 89 71.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.4e-29 132.1 92 69.6
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.1e-29 131.7 89 73.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.1e-29 131.7 89 73.0
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.1e-29 131.7 95 70.5
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.1e-29 131.7 94 73.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.1e-29 131.7 94 73.4
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 4.1e-29 131.3 97 69.1
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.1e-29 131.3 81 81.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 4.1e-29 131.3 91 72.5
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 5.3e-29 131.0 81 81.5
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 5.3e-29 131.0 89 74.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.9e-29 130.6 81 80.2
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 6.9e-29 130.6 83 73.5
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.2e-28 129.8 82 76.8
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.2e-28 129.8 91 68.1
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.5e-28 129.4 99 67.7
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.5e-28 129.4 97 68.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 2.0e-28 129.0 94 66.0
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 2.6e-28 128.6 86 73.3
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.4e-28 128.3 84 71.4
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 4.5e-28 127.9 87 70.1
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 4.5e-28 127.9 80 77.5
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 4.5e-28 127.9 80 77.5
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.5e-28 127.9 80 77.5
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.7e-28 127.1 88 73.9
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.0e-27 126.7 96 65.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.3e-27 126.3 87 73.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 1.7e-27 125.9 94 62.8
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 1.7e-27 125.9 94 63.8
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 76.5
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.8e-27 124.8 80 75.0
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.8e-27 124.8 94 63.8
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.8e-27 124.8 92 68.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.0e-27 124.4 79 75.9
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 6.5e-27 124.0 94 62.8
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 6.5e-27 124.0 99 66.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.5e-27 124.0 99 64.6
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 8.5e-27 123.6 94 66.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 8.5e-27 123.6 94 66.0
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.1e-26 123.2 88 71.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.1e-26 123.2 94 66.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.4e-26 122.9 79 73.4
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 3.2e-26 121.7 81 70.4
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 3.2e-26 121.7 96 62.5
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 3.2e-26 121.7 96 62.5
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 3.2e-26 121.7 96 62.5
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.2e-26 121.3 81 75.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 4.2e-26 121.3 88 70.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 5.5e-26 120.9 81 69.1
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 5.5e-26 120.9 81 69.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 5.5e-26 120.9 81 69.1
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 5.5e-26 120.9 85 72.9
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 7.2e-26 120.6 81 75.3
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 9.4e-26 120.2 81 67.9
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 9.4e-26 120.2 81 67.9
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 9.4e-26 120.2 81 67.9
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 9.4e-26 120.2 81 67.9
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 9.4e-26 120.2 78 74.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.6e-25 119.4 96 62.5
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.6e-25 119.4 78 75.6
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.1e-25 119.0 80 70.0
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 6.1e-25 117.5 81 75.3
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.3e-24 115.5 94 61.7
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 3.9e-24 114.8 95 65.3
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 6.7e-24 114.0 85 70.6
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 8.8e-24 113.6 73 76.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.1e-23 113.2 87 65.5
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 75.7
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 77.0
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 2.0e-23 112.5 83 65.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-23 112.5 83 65.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 2.0e-23 112.5 83 65.1
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.5e-23 112.1 80 71.2
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 4.3e-23 111.3 76 72.4
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 7.4e-23 110.5 93 57.0
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 8.2e-22 107.1 80 71.2
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.4e-21 106.3 76 67.1
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.8e-21 105.9 90 62.2
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 6.9e-21 104.0 78 67.9
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.2e-20 103.2 73 69.9
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.5e-20 102.8 95 53.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.4e-20 101.7 85 64.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 2.9e-19 98.6 72 69.4
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.4e-18 96.3 78 60.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.2e-17 93.2 82 57.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.4e-16 89.7 83 57.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 3.9e-16 88.2 81 59.3
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.9e-16 88.2 66 65.2
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.3e-14 80.9 48 77.1
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.4e-13 79.0 52 71.2
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.4e-13 79.0 52 71.2
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.0e-11 73.6 81 46.9
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.0e-11 73.6 51 68.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 4.4e-07 58.2 40 72.5


User provided reference genes

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