Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01766 Erythranthe guttata HOM05D002017 ORTHO05D002042 6.2e-60 233.8 107 100.0
Migut.B00465 Erythranthe guttata HOM05D002017 ORTHO05D002042 1.9e-48 195.7 93 94.6
Migut.B00466 Erythranthe guttata HOM05D002017 ORTHO05D002042 1.3e-46 189.5 91 92.3
Cfa000062 Carpinus fangiana HOM05D002017 ORTHO05D002042 5.5e-08 61.2 74 32.4
CsaV3_5G014010 Cucumis sativus L. HOM05D002017 ORTHO05D002042 5.5e-08 61.2 79 34.2
Gohir.A02G008200 Gossypium hirsutum HOM05D002017 ORTHO05D002042 5.5e-08 61.2 79 34.2
Gohir.D02G008400 Gossypium hirsutum HOM05D002017 ORTHO05D002042 5.5e-08 61.2 79 34.2
Gorai.005G010000 Gossypium raimondii HOM05D002017 ORTHO05D002042 5.5e-08 61.2 79 34.2
SMO367G0908 Selaginella moellendorffii HOM05D002017 ORTHO05D002042 5.5e-08 61.2 78 34.6
Ca_03393_v3 Cicer arietinum L. HOM05D002017 ORTHO05D002042 7.1e-08 60.8 74 35.1
Ca_29680_v3 Cicer arietinum L. HOM05D002017 ORTHO05D002042 7.1e-08 60.8 74 35.1
Duzib151G0763 Durio zibethinus HOM05D002017 ORTHO05D002042 7.1e-08 60.8 79 32.9
Manes.10G067400 Manihot esculenta HOM05D002017 ORTHO05D002042 7.1e-08 60.8 74 35.1
CiPaw.05G024500 Carya illinoinensis HOM05D002017 ORTHO05D002042 9.3e-08 60.5 79 32.9
Sed0016982 Sechium edule HOM05D002017 ORTHO05D002042 9.3e-08 60.5 79 32.9
TAR629G1564 Trochodendron aralioides HOM05D002017 ORTHO05D002042 9.3e-08 60.5 79 31.6
CSS0015685 Camellia sinensis var. sinensis HOM05D002017 ORTHO05D002042 1.2e-07 60.1 79 32.9
PGR031G2584 Punica granatum HOM05D002017 ORTHO05D002042 1.2e-07 60.1 74 33.8
Sed0011331 Sechium edule HOM05D002017 ORTHO05D002042 1.2e-07 60.1 79 31.6
arahy.Tifrunner.gnm1.ann1.0E0Z25 Arachis hypogaea HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
arahy.Tifrunner.gnm1.ann1.CTV4I1 Arachis hypogaea HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
CiPaw.07G066900 Carya illinoinensis HOM05D002017 ORTHO05D002042 1.6e-07 59.7 79 31.6
Ca_11080_v3 Cicer arietinum L. HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
COL.COLO4_32957 Corchorus olitorius HOM05D002017 ORTHO05D002042 1.6e-07 59.7 79 31.6
MBI10_g30417_MAGBIO Magnolia biondii HOM05D002017 ORTHO05D002042 1.6e-07 59.7 79 32.9
Medtr2g070740 Medicago truncatula HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
Nn4g26574 Nelumbo nucifera HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
THA.LOC104808078 Tarenaya hassleriana HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
THA.LOC104813980 Tarenaya hassleriana HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
GSVIVG01005341001 Vitis vinifera HOM05D002017 ORTHO05D002042 1.6e-07 59.7 74 33.8
CDE02G1097 Ceratophyllum demersum HOM05D002017 ORTHO05D002042 2.1e-07 59.3 74 35.1
Gohir.D02G007900 Gossypium hirsutum HOM05D002017 ORTHO05D002042 2.1e-07 59.3 80 33.8
Gorai.005G009400 Gossypium raimondii HOM05D002017 ORTHO05D002042 2.1e-07 59.3 80 33.8
Mapoly0064s0067 Marchantia polymorpha HOM05D002017 ORTHO05D002042 2.1e-07 59.3 74 32.4
Psat0s1301g0040 Pisum sativum HOM05D002017 ORTHO05D002042 2.1e-07 59.3 74 32.4
QL09p032443 Quercus lobata HOM05D002017 ORTHO05D002042 2.1e-07 59.3 74 33.8
TPR.G26605 Trifolium pratense HOM05D002017 ORTHO05D002042 2.1e-07 59.3 74 32.4
Actinidia04590 Actinidia chinensis HOM05D002017 ORTHO05D002042 2.7e-07 58.9 77 33.8
FvH4_3g16590 Fragaria vesca HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
FAN11G4027 Fragaria x ananassa HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
FAN16G1745 Fragaria x ananassa HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
FAN21G0116 Fragaria x ananassa HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
FAN21G3406 Fragaria x ananassa HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
FAN25G0096 Fragaria x ananassa HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
Glyma.13G259300 Glycine max HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
Glyma.15G248800 Glycine max HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
MD05G1208800 Malus domestica HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
MD10G1195300 Malus domestica HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
Medtr8g008730 Medicago truncatula HOM05D002017 ORTHO05D002042 2.7e-07 58.9 73 34.2
Prupe.4G148700 Prunus persica HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
RcHm_v2.0_Chr5g0027661 Rosa chinensis HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
Sc18g0004260 Simmondsia chinensis HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 33.8
VMungo0720G2051 Vigna mungo HOM05D002017 ORTHO05D002042 2.7e-07 58.9 74 32.4
Atru.chr2.655 Acer truncatum HOM05D002017 ORTHO05D002042 3.5e-07 58.5 74 31.1
EL10Ac2g03269 Beta vulgaris HOM05D002017 ORTHO05D002042 3.5e-07 58.5 74 32.4
TWI73G0955 Tripterygium wilfordii HOM05D002017 ORTHO05D002042 3.5e-07 58.5 74 32.4
AUR62006425 Chenopodium quinoa HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 31.1
AUR62029774 Chenopodium quinoa HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 31.1
FAN28G1716 Fragaria x ananassa HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 31.1
Lj8A574G20 Lonicera japonica HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 32.4
Lj8A578G18 Lonicera japonica HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 32.4
Oeu006132.1 Olea europaea HOM05D002017 ORTHO05D002042 4.6e-07 58.2 76 28.9
Phvul.005G060900 Phaseolus vulgaris HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 32.4
Pp3c23_13930 Physcomitrium patens HOM05D002017 ORTHO05D002042 4.6e-07 58.2 74 29.7
ATR0681G207 Amborella trichopoda HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 32.4
AagrBONN_evm.TU.Sc2ySwM_228.4386 Anthoceros agrestis HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 32.4
CANSAT01G1906 Cannabis sativa HOM05D002017 ORTHO05D002042 6.0e-07 57.8 72 33.3
CANSAT25G3058 Cannabis sativa HOM05D002017 ORTHO05D002042 6.0e-07 57.8 72 33.3
Cfa019526 Carpinus fangiana HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 31.1
ClCG11G000460 Citrullus lanatus HOM05D002017 ORTHO05D002042 6.0e-07 57.8 79 34.2
Ciclev10021131m.g Citrus clementina HOM05D002017 ORTHO05D002042 6.0e-07 57.8 75 36.0
Haze_09265 Corylus avellana HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 31.1
Haze_13409 Corylus avellana HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 31.1
Lj4g0014188 Lotus japonicus HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 32.4
Lalb_Chr20g0108951 Lupinus albus HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 31.1
Lalb_Chr25g0285411 Lupinus albus HOM05D002017 ORTHO05D002042 6.0e-07 57.8 74 31.1
BcaB02g10250 Brassica carinata HOM05D002017 ORTHO05D002042 7.9e-07 57.4 77 31.2
DCAR_019009 Daucus carota HOM05D002017 ORTHO05D002042 7.9e-07 57.4 74 32.4
DCAR_029474 Daucus carota HOM05D002017 ORTHO05D002042 7.9e-07 57.4 74 32.4
Dinv26668 Davidia involucrata HOM05D002017 ORTHO05D002042 7.9e-07 57.4 72 33.3
Eucgr.F03206 Eucalyptus grandis HOM05D002017 ORTHO05D002042 7.9e-07 57.4 74 31.1
Lju432A3G19 Lonicera japonica HOM05D002017 ORTHO05D002042 7.9e-07 57.4 72 33.3
Lju50A42G23 Lonicera japonica HOM05D002017 ORTHO05D002042 7.9e-07 57.4 72 33.3
PSO063G7396 Papaver somniferum HOM05D002017 ORTHO05D002042 7.9e-07 57.4 74 32.4
PSO782G4890 Papaver somniferum HOM05D002017 ORTHO05D002042 7.9e-07 57.4 74 32.4
Hund02319 Selenicereus undatus HOM05D002017 ORTHO05D002042 7.9e-07 57.4 72 33.3
SEGI_27076 Sequoiadendron giganteum HOM05D002017 ORTHO05D002042 7.9e-07 57.4 72 33.3
CSS0000884 Camellia sinensis var. sinensis HOM05D002017 ORTHO05D002042 1.0e-06 57.0 79 31.6
Cfa019527 Carpinus fangiana HOM05D002017 ORTHO05D002042 1.0e-06 57.0 79 29.1
FvH4_1g15490 Fragaria vesca HOM05D002017 ORTHO05D002042 1.0e-06 57.0 74 31.1
FAN19G2615 Fragaria x ananassa HOM05D002017 ORTHO05D002042 1.0e-06 57.0 74 31.1
TPR.G22993 Trifolium pratense HOM05D002017 ORTHO05D002042 1.0e-06 57.0 79 30.4
EL10Ac2g03608 Beta vulgaris HOM05D002017 ORTHO05D002042 1.3e-06 56.6 74 33.8
A02p15540 Brassica napus HOM05D002017 ORTHO05D002042 1.8e-06 56.2 85 29.4
Rhsim06G0185000 Rhododendron simsii HOM05D002017 ORTHO05D002042 1.8e-06 56.2 79 30.4
CSS0037022 Camellia sinensis var. sinensis HOM05D002017 ORTHO05D002042 2.3e-06 55.8 83 28.9
MCO15G593 Micromonas commoda HOM05D002017 ORTHO05D002042 2.3e-06 55.8 79 30.4
AL1G29340 Arabidopsis lyrata HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
BcaB02g06687 Brassica carinata HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
BcaC03g15022 Brassica carinata HOM05D002017 ORTHO05D002042 3.0e-06 55.5 75 29.3
BcaC07g41401 Brassica carinata HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
BcaC07g41440 Brassica carinata HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
A06p13020 Brassica napus HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
A09p60590 Brassica napus HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
C02p25680 Brassica napus HOM05D002017 ORTHO05D002042 3.0e-06 55.5 75 29.3
C04p21420 Brassica napus HOM05D002017 ORTHO05D002042 3.0e-06 55.5 90 28.9
C08p44050 Brassica napus HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
BolC2t08637H Brassica oleracea HOM05D002017 ORTHO05D002042 3.0e-06 55.5 75 29.3
BolC4t23667H Brassica oleracea HOM05D002017 ORTHO05D002042 3.0e-06 55.5 90 28.9
BolC8t51953H Brassica oleracea HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
BraA02t06615Z Brassica rapa HOM05D002017 ORTHO05D002042 3.0e-06 55.5 85 30.6
BraA09t41429Z Brassica rapa HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
CSS0013480 Camellia sinensis var. sinensis HOM05D002017 ORTHO05D002042 3.0e-06 55.5 79 30.4
Thhalv10007973m.g Eutrema salsugineum HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
Lsat_1_v5_gn_7_3521 Lactuca sativa HOM05D002017 ORTHO05D002042 3.0e-06 55.5 72 31.9
Sp1g15250 Schrenkiella parvula HOM05D002017 ORTHO05D002042 3.0e-06 55.5 74 29.7
Aa31LG7G1970 Aethionema arabicum HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 29.7
Ah.04g160580 Amaranthus hybridus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 31.1
Ah.04g160670 Amaranthus hybridus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 31.1
Ah.14g079520 Amaranthus hybridus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 31.1
Ah.14g079530 Amaranthus hybridus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 31.1
Ah.14g085950 Amaranthus hybridus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 31.1
BcaC05g25667 Brassica carinata HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 29.7
A05p15970 Brassica napus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 90 28.9
C04p21540 Brassica napus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 90 28.9
C05p15480 Brassica napus HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 29.7
BolC4t23680H Brassica oleracea HOM05D002017 ORTHO05D002042 3.9e-06 55.1 90 28.9
Carub.0001s1686 Capsella rubella HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 29.7
CARHR017670 Cardamine hirsuta HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 29.7
Cre17.g741100 Chlamydomonas reinhardtii HOM05D002017 ORTHO05D002042 3.9e-06 55.1 74 31.1
Dinv25522 Davidia involucrata HOM05D002017 ORTHO05D002042 3.9e-06 55.1 83 28.9
Atru.chr7.1964 Acer truncatum HOM05D002017 ORTHO05D002042 6.7e-06 54.3 77 31.2
Ah.00g001200 Amaranthus hybridus HOM05D002017 ORTHO05D002042 6.7e-06 54.3 74 31.1
CSS0003794 Camellia sinensis var. sinensis HOM05D002017 ORTHO05D002042 6.7e-06 54.3 79 29.1
Medtr1g073720 Medicago truncatula HOM05D002017 ORTHO05D002042 6.7e-06 54.3 80 32.5
Ah.00g001210 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.00g001220 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.04g160610 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.04g160620 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.04g160630 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.04g160640 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.04g160650 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
Ah.14g079460 Amaranthus hybridus HOM05D002017 ORTHO05D002042 8.7e-06 53.9 74 31.1
CANSAT25G0580 Cannabis sativa HOM05D002017 ORTHO05D002042 8.7e-06 53.9 69 31.9
ECA236G3744 Erigeron canadensis HOM05D002017 ORTHO05D002042 8.7e-06 53.9 72 30.6


User provided reference genes

Program Settings