Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 3651.7 1836 100.0
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 2536.1 1840 70.1
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 2115.9 1876 60.1
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2082.4 1876 58.7
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1984.5 1853 56.9
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1973.7 1855 56.8
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1972.6 1857 56.1
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1968.7 1868 55.3
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1959.9 1883 55.1
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1952.2 1904 55.8
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1950.3 1855 54.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1932.1 1588 62.7
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1923.3 1864 54.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1921.7 1859 54.8
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1914.4 1854 54.5
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1908.6 2066 50.9
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1905.2 1860 55.0
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1894.8 1859 54.5
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1881.7 1890 53.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1881.7 1858 54.5
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1880.5 1767 56.6
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1869.7 1861 53.7
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1853.6 1862 54.0
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1850.9 1695 57.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1835.5 1864 53.2
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1820.1 1849 51.8
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1812.7 1863 51.6
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1811.2 1941 52.4
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1809.7 1864 52.4
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1803.9 1827 53.0
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1801.6 1858 52.0
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1796.2 1856 51.6
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1795.0 1860 51.6
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1793.9 1859 51.9
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1791.9 1866 51.7
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1788.1 1861 51.0
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1784.2 1840 52.0
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1781.9 1864 51.8
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1775.8 1856 51.1
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1768.4 1848 51.6
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1766.5 1855 51.5
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1765.7 1854 51.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1745.3 1755 54.2
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1728.0 1861 50.3
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1727.6 1860 50.9
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1724.9 1872 51.0
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1721.1 1874 49.9
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1715.3 1873 50.6
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1714.5 1549 57.8
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1711.8 1862 50.0
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1710.3 1872 50.1
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1709.1 1862 49.9
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1706.8 1857 49.9
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1703.3 1859 49.7
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1703.3 1857 49.9
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1700.6 1863 49.3
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1696.0 1859 49.4
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1687.5 1879 49.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1687.2 1863 50.9
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1684.8 1861 49.1
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1675.2 1853 48.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1665.6 1908 48.7
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1663.7 1855 48.5
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1656.3 1861 50.1
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1656.0 1857 49.0
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1639.0 1514 57.6
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1616.3 1867 48.4
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1610.9 1850 48.4
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1607.0 1862 47.7
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1591.2 1549 54.6
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1510.0 1773 47.0
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1471.4 1666 48.7
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1469.9 1876 44.9
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1332.4 1140 61.0
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1303.5 1457 48.4
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 0.0e+00 1300.0 1015 68.6
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1274.6 1444 48.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1242.6 1406 49.1
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 0.0e+00 1230.7 1478 48.8
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1205.3 1465 47.0
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 0.0e+00 1160.6 794 75.8
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1134.0 1065 57.1
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1120.1 1003 58.7
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.8e-309 1066.2 1377 45.8
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 5.4e-305 1052.0 958 57.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 5.8e-299 1031.9 1933 34.4
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 7.8e-296 1021.5 1754 37.7
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 8.8e-247 858.6 805 57.9
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.1e-224 782.7 613 64.9
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.0e-223 780.0 923 47.7
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.5e-206 724.9 367 99.5
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.6e-203 714.9 749 54.7
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 3.1e-191 674.1 514 67.7
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 3.3e-177 627.5 1516 30.3
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.6e-163 580.5 473 63.8
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.8e-144 517.3 405 68.9
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 3.2e-140 504.6 406 62.6
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 7.1e-140 503.4 404 62.9
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.6e-131 474.6 633 41.4
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.0e-130 471.5 441 58.7
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 8.8e-130 469.9 478 55.4
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.6e-126 458.4 395 60.0
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.9e-126 457.2 334 71.9
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.9e-122 444.5 579 42.7
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 9.7e-113 413.3 309 66.7
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.7e-109 402.5 602 38.5
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.2e-109 402.1 539 39.1
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.9e-92 345.9 282 61.7
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 6.8e-90 337.4 308 58.4
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 2.3e-82 312.4 378 47.1
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.1e-82 312.0 499 37.9
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.9e-79 302.8 348 48.9
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 2.3e-74 285.8 246 56.9
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 7.5e-73 280.8 178 75.8
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 6.0e-70 271.2 383 41.0
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.8e-70 270.8 515 32.6
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.0e-69 270.4 215 62.8
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.9e-69 268.5 178 72.5
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.0e-65 256.1 552 31.3
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.7e-64 251.9 485 35.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 9.9e-57 227.3 178 60.7
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.7e-53 216.5 765 25.2
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 8.7e-53 214.2 374 36.1
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-52 213.8 437 34.8
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-50 207.2 137 70.1
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.4e-50 206.1 400 34.0
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.2e-48 199.5 844 23.6
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.4e-47 196.1 886 23.6
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.0e-46 191.4 185 55.7
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.9e-45 188.7 142 64.8
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 6.6e-45 188.0 114 81.6
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.5e-44 186.8 105 82.9
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.3e-40 173.7 311 34.7
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.1e-37 161.8 151 58.9
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 1.6e-35 156.8 211 39.3
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 1.5e-33 150.2 166 50.0
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.1e-30 139.8 151 40.4
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 2.3e-29 136.3 134 50.7
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.6e-27 130.2 130 53.8
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 2.6e-25 122.9 90 65.6
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 2.6e-25 122.9 90 66.7
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 7.6e-25 121.3 136 48.5
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.3e-24 120.6 82 70.7
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 3.8e-24 119.0 82 70.7
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.4e-24 117.9 82 69.5
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.3e-21 110.5 175 38.3
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.0e-21 109.4 159 38.4
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.1e-21 108.6 74 68.9
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.3e-20 105.9 83 63.9
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 6.3e-19 101.7 52 92.3
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.4e-13 84.0 137 33.6
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.1e-13 82.0 128 40.6
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.1e-12 80.9 63 61.9
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 1.5e-12 80.5 71 57.7
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.7e-11 77.0 71 56.3
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 2.8e-11 76.3 117 35.9
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 2.8e-11 76.3 117 35.9
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 8.2e-11 74.7 64 59.4
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.1e-10 74.3 155 36.1
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 1.4e-10 73.9 50 70.0
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.4e-10 73.9 50 70.0
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 3.1e-10 72.8 83 44.6
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 4.1e-10 72.4 49 69.4
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 1.5e-09 70.5 63 55.6
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 2.0e-09 70.1 49 67.3
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 3.4e-09 69.3 63 52.4
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 4.5e-09 68.9 98 41.8
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 5.9e-09 68.6 149 31.5
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 3.8e-08 65.9 105 34.3
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.2e-06 60.8 190 26.3
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 3.6e-06 59.3 86 36.0
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 3.6e-06 59.3 86 36.0


User provided reference genes

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