Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1511.5 768 100.0
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1257.3 762 82.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1235.3 774 81.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1214.5 772 80.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1182.5 779 77.9
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1176.4 789 76.9
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1174.5 784 76.9
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1172.1 783 77.1
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1171.8 784 77.2
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1171.0 786 76.6
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1170.6 779 78.2
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1164.4 786 76.5
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1156.7 781 76.4
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1155.6 783 76.0
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1154.8 783 76.1
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1153.7 787 76.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1149.0 778 77.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1147.1 783 75.5
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1145.2 728 79.1
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1143.6 780 75.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1142.5 765 76.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 750 77.2
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 784 75.1
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1138.6 773 75.4
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1134.4 754 76.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 772 75.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 786 74.8
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1133.2 828 72.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1132.9 777 75.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1131.7 772 75.9
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1131.3 764 76.0
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1130.9 777 75.8
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1126.7 713 80.1
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1125.5 767 76.4
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1123.2 766 75.7
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1122.8 774 75.3
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 731 76.7
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 773 75.3
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1116.3 695 80.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1116.3 714 78.9
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1115.5 776 74.4
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1113.2 735 76.2
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1112.8 769 74.3
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1110.9 780 74.2
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 0.0e+00 1100.5 763 74.8
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1096.6 740 75.8
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1095.5 784 72.4
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1093.2 702 78.5
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1091.3 792 71.8
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 0.0e+00 1082.4 732 76.8
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 1.4e-310 1069.3 815 69.6
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 2.3e-310 1068.5 775 71.6
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 6.8e-310 1067.0 762 72.8
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 4.9e-308 1060.8 724 72.8
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.8e-307 1058.9 780 70.8
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 729 73.9
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 5.0e-305 1050.8 793 70.6
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 5.0e-305 1050.8 786 69.2
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 4.3e-304 1047.7 751 72.3
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.6e-303 1045.8 784 69.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 770 70.9
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 777 70.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.2e-301 1039.6 747 71.8
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 2.6e-301 1038.5 773 69.6
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 2.6e-301 1038.5 773 69.6
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 3.4e-301 1038.1 788 69.3
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 7.5e-301 1036.9 788 69.5
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 7.5e-301 1036.9 776 69.6
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.2e-300 1035.4 646 80.5
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.1e-299 1033.1 766 70.4
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 770 70.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.4e-299 1031.9 764 70.2
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 9.2e-299 1030.0 849 65.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 784 68.8
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.7e-298 1028.5 784 68.2
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.6e-297 1023.5 787 68.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 776 68.7
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.3e-296 1021.5 766 68.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.3e-296 1021.1 767 69.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 4.3e-296 1021.1 767 69.4
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 5.6e-296 1020.8 778 69.3
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.2e-295 1019.6 777 68.5
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.6e-295 1019.2 779 68.0
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 3.6e-295 1018.1 778 68.5
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.2e-295 1017.3 771 69.8
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 6.2e-295 1017.3 725 73.2
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.8e-294 1015.8 720 73.9
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 8.9e-294 1013.4 772 68.1
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.7e-292 1008.1 772 69.0
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.4e-291 1006.1 727 70.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 774 68.3
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 7.0e-291 1003.8 771 69.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 731 69.6
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.1e-288 996.5 764 69.2
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.3e-288 995.0 673 75.3
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.9e-284 981.9 695 73.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.2e-243 845.1 555 75.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.5e-242 842.0 555 74.6
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.0e-241 839.0 622 71.5
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 3.0e-241 839.0 745 58.9
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.3e-239 833.6 718 58.6
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.6e-234 815.5 724 58.7
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 4.8e-231 805.1 722 58.3
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 7.9e-226 787.7 716 58.2
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.9e-220 769.2 541 67.3
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 8.2e-215 751.1 531 68.2
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 5.3e-214 748.4 577 63.8
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.7e-199 699.1 518 66.6
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.5e-192 674.9 414 79.5
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 7.3e-171 605.1 403 76.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.6e-164 582.0 414 67.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.7e-149 533.5 343 77.8
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.0e-127 461.8 269 82.5
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.4e-105 387.5 682 36.8
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.6e-99 367.5 621 42.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.7e-98 363.6 491 42.0
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.8e-97 361.3 266 64.7
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-93 348.2 295 62.7
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 2.2e-82 311.2 273 63.7
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.3e-70 270.8 351 47.9
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.8e-69 267.7 704 31.2
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.5e-38 165.6 99 75.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.9e-36 156.8 83 85.5
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-32 145.6 126 61.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.6e-32 144.1 156 52.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 8.7e-23 113.2 124 51.6
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.1e-22 112.8 124 51.6
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.3e-22 111.3 54 88.9
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 7.1e-17 93.6 102 49.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.3e-15 88.6 80 57.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.9e-10 71.6 74 55.4
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.9e-09 68.9 80 52.5
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.1e-08 65.5 371 24.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 3.6e-08 64.7 82 47.6
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.3e-07 62.0 79 41.8
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.3e-06 58.2 253 24.9
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 3.3e-06 58.2 344 24.1
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 7.4e-06 57.0 249 24.9
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 7.4e-06 57.0 266 25.6


User provided reference genes

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