Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00979 Erythranthe guttata HOM05D002990 ORTHO05D035187 9.8e-32 140.2 113 100.0
Migut.F01356 Erythranthe guttata HOM05D002990 ORTHO05D035187 3.7e-31 138.3 113 99.1
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 2.0e-29 132.5 110 96.4
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 2.5e-19 99.0 111 55.9
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 2.5e-19 99.0 112 64.3
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 2.1e-18 95.9 113 60.2
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 1.1e-17 93.6 111 75.7
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 2.3e-17 92.4 112 75.9
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 4.0e-17 91.7 112 75.9
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 4.0e-17 91.7 111 82.0
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 6.8e-17 90.9 113 53.1
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 2.0e-16 89.4 111 58.6
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 5.8e-16 87.8 111 72.1
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 7.5e-16 87.4 111 68.5
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 9.8e-16 87.0 111 61.3
vmacro19861 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 9.8e-16 87.0 116 57.8
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 1.3e-15 86.7 111 60.4
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 1.7e-15 86.3 112 60.7
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 2.2e-15 85.9 111 59.5
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 2.9e-15 85.5 114 58.8
Peaxi162Scf00011g01423 Petunia axillaris HOM05D002990 ORTHO05D003954 6.4e-15 84.3 112 72.3
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 6.4e-15 84.3 112 58.0
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 8.3e-15 84.0 113 61.1
CSS0049984 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 8.3e-15 84.0 112 72.3
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 8.3e-15 84.0 111 52.3
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 8.3e-15 84.0 111 52.3
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 1.1e-14 83.6 111 70.3
Dinv29598 Davidia involucrata HOM05D002990 ORTHO05D003954 1.9e-14 82.8 111 60.4
Oeu000139.1 Olea europaea HOM05D002990 ORTHO05D003954 3.2e-14 82.0 111 48.6
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 3.2e-14 82.0 112 69.6
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 1.6e-13 79.7 111 46.8
SEGI_30717 Sequoiadendron giganteum HOM05D002990 ORTHO05D003954 2.0e-13 79.3 108 47.2
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 3.5e-13 78.6 109 54.1
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 3.5e-13 78.6 114 50.0
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 4.6e-13 78.2 108 49.1
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 1.0e-12 77.0 52 75.0
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.0e-12 77.0 52 76.9
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 1.0e-12 77.0 111 55.0
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 1.3e-12 76.6 113 68.1
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 1.3e-12 76.6 111 49.5
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 2.3e-12 75.9 52 75.0
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 2.3e-12 75.9 52 75.0
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 2.3e-12 75.9 109 48.6
Thecc.02G008000 Theobroma cacao HOM05D002990 ORTHO05D003954 3.0e-12 75.5 104 50.0
Lj5C267G4 Lonicera japonica HOM05D002990 ORTHO05D003954 3.9e-12 75.1 112 50.9
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 3.9e-12 75.1 54 70.4
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 5.0e-12 74.7 111 45.9
MELO3C007300.2 Cucumis melo HOM05D002990 ORTHO05D003954 8.6e-12 73.9 111 52.3
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 8.6e-12 73.9 52 69.2
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 8.6e-12 73.9 113 66.4
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 8.6e-12 73.9 111 45.9
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 1.1e-11 73.6 111 55.0
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 1.1e-11 73.6 111 64.0
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.1e-11 73.6 112 52.7
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 1.1e-11 73.6 111 65.8
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 1.1e-11 73.6 111 45.0
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 1.1e-11 73.6 109 48.6
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 1.5e-11 73.2 106 54.7
Haze_04601 Corylus avellana HOM05D002990 ORTHO05D003954 1.5e-11 73.2 111 56.8
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 1.5e-11 73.2 52 71.2
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 1.9e-11 72.8 108 46.3
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 1.9e-11 72.8 108 46.3
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 1.9e-11 72.8 52 73.1
Sc09g0003570 Simmondsia chinensis HOM05D002990 ORTHO05D003954 1.9e-11 72.8 52 71.2
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 2.5e-11 72.4 110 76.4
PSO832G0554 Papaver somniferum HOM05D002990 ORTHO05D003954 2.5e-11 72.4 52 71.2
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 3.3e-11 72.0 111 48.6
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 3.3e-11 72.0 52 69.2
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 3.3e-11 72.0 53 71.7
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 4.3e-11 71.6 113 63.7
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 4.3e-11 71.6 52 69.2
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 5.6e-11 71.2 53 71.7
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 7.3e-11 70.9 109 56.0
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 9.5e-11 70.5 52 67.3
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 9.5e-11 70.5 52 67.3
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 9.5e-11 70.5 52 67.3
PSO210G5298 Papaver somniferum HOM05D002990 ORTHO05D003954 9.5e-11 70.5 52 69.2
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 9.5e-11 70.5 52 67.3
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 9.5e-11 70.5 111 73.0
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 1.2e-10 70.1 112 48.2
Haze_16449 Corylus avellana HOM05D002990 ORTHO05D003954 1.2e-10 70.1 111 53.2
Lj9C298T10 Lonicera japonica HOM05D002990 ORTHO05D003954 1.6e-10 69.7 117 72.6
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 1.6e-10 69.7 49 71.4
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 2.1e-10 69.3 52 69.2
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 2.1e-10 69.3 114 44.7
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 2.1e-10 69.3 52 67.3
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 2.1e-10 69.3 104 75.0
CDE04G3634 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.8e-10 68.9 106 45.3
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 2.8e-10 68.9 52 75.0
DCAR_001749 Daucus carota HOM05D002990 ORTHO05D003954 2.8e-10 68.9 52 75.0
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 2.8e-10 68.9 52 65.4
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 2.8e-10 68.9 111 71.2
Cpa.g.sc30.147 Carica papaya HOM05D002990 ORTHO05D003954 3.6e-10 68.6 111 54.1
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.6e-10 68.6 52 67.3
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 4.7e-10 68.2 53 69.8
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 4.7e-10 68.2 109 52.3
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.7e-10 68.2 52 63.5
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.7e-10 68.2 52 63.5
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.7e-10 68.2 52 63.5
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 4.7e-10 68.2 111 58.6
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 4.7e-10 68.2 52 63.5
MBI19_g42889_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 4.7e-10 68.2 52 63.5
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 4.7e-10 68.2 54 64.8
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 4.7e-10 68.2 104 47.1
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 4.7e-10 68.2 52 65.4
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 6.2e-10 67.8 114 51.8
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 6.2e-10 67.8 54 66.7
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 6.2e-10 67.8 54 66.7
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 6.2e-10 67.8 109 56.0
Sabra12G0094700 Salix brachista HOM05D002990 ORTHO05D003954 6.2e-10 67.8 52 65.4
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 8.1e-10 67.4 54 64.8
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 8.1e-10 67.4 54 64.8
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 8.1e-10 67.4 54 61.1
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 1.1e-09 67.0 112 53.6
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 1.1e-09 67.0 109 58.7
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 1.1e-09 67.0 109 58.7
EL10Ac8g18392 Beta vulgaris HOM05D002990 ORTHO05D003954 1.1e-09 67.0 104 45.2
Ciclev10014709m.g Citrus clementina HOM05D002990 ORTHO05D003954 1.1e-09 67.0 115 55.7
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 1.1e-09 67.0 52 63.5
MBI15_g43444_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.1e-09 67.0 53 64.2
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 1.1e-09 67.0 109 43.1
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 1.1e-09 67.0 109 46.8
Potri.015G125400 Populus trichocarpa HOM05D002990 ORTHO05D003954 1.1e-09 67.0 52 67.3
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 1.1e-09 67.0 52 65.4
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 1.1e-09 67.0 111 69.4
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 1.4e-09 66.6 52 65.4
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 1.4e-09 66.6 52 65.4
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 1.8e-09 66.2 109 53.2
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.8e-09 66.2 52 65.4
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 1.8e-09 66.2 109 53.2
MBI14_g22163_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 2.3e-09 65.9 112 69.6
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 2.3e-09 65.9 52 67.3
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 2.3e-09 65.9 54 61.1
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 3.1e-09 65.5 52 65.4
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.0e-09 65.1 52 63.5
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 4.0e-09 65.1 106 50.0
ATR0824G151 Amborella trichopoda HOM05D002990 ORTHO05D003954 6.8e-09 64.3 53 62.3
Ah.06g187310 Amaranthus hybridus HOM05D002990 ORTHO05D003954 8.9e-09 63.9 104 43.3
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 8.9e-09 63.9 111 54.1
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 1.2e-08 63.5 52 63.5
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 1.2e-08 63.5 52 65.4
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 1.5e-08 63.2 104 42.3
AUR62011579 Chenopodium quinoa HOM05D002990 ORTHO05D003954 1.5e-08 63.2 52 61.5
AUR62002361 Chenopodium quinoa HOM05D002990 ORTHO05D003954 2.0e-08 62.8 52 63.5
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 2.0e-08 62.8 52 61.5
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 2.0e-08 62.8 52 67.3
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 2.0e-08 62.8 52 63.5
ATR1132G100 Amborella trichopoda HOM05D002990 ORTHO05D003954 3.4e-08 62.0 52 61.5
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 3.4e-08 62.0 49 65.3
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 3.4e-08 62.0 52 59.6
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 3.4e-08 62.0 109 53.2
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 3.4e-08 62.0 51 62.7
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 4.4e-08 61.6 109 46.8
Pp3c24_4890 Physcomitrium patens HOM05D002990 ORTHO05D003954 4.4e-08 61.6 53 60.4
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 5.8e-08 61.2 104 58.7
Pp3c23_8750 Physcomitrium patens HOM05D002990 ORTHO05D003954 5.8e-08 61.2 109 42.2
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.3e-07 60.1 112 51.8
Pp3c20_16550 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.3e-07 60.1 109 40.4
Pp3c8_9870 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.3e-07 60.1 53 58.5
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 2.9e-07 58.9 52 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2368 Anthoceros agrestis HOM05D002990 ORTHO05D003954 3.7e-07 58.5 53 58.5
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 3.7e-07 58.5 52 61.5
Mapoly0022s0045 Marchantia polymorpha HOM05D002990 ORTHO05D003954 3.7e-07 58.5 53 62.3
A10p31110 Brassica napus HOM05D002990 ORTHO05D003954 6.4e-07 57.8 109 37.6
AL6G14720 Arabidopsis lyrata HOM05D002990 ORTHO05D003954 8.3e-07 57.4 52 63.5
C09p71700 Brassica napus HOM05D002990 ORTHO05D003954 8.3e-07 57.4 109 37.6
BolC9t59926H Brassica oleracea HOM05D002990 ORTHO05D003954 8.3e-07 57.4 109 37.6
BraA10t45158Z Brassica rapa HOM05D002990 ORTHO05D003954 8.3e-07 57.4 109 37.6
AT5G05010 Arabidopsis thaliana HOM05D002990 ORTHO05D003954 1.1e-06 57.0 52 61.5
Potri.001G293150 Populus trichocarpa HOM05D002990 ORTHO05D035187 1.1e-06 57.0 52 55.8
Carub.0006s0395 Capsella rubella HOM05D002990 ORTHO05D003954 1.9e-06 56.2 52 61.5
Thhalv10013243m.g Eutrema salsugineum HOM05D002990 ORTHO05D003954 1.9e-06 56.2 52 61.5
Nitab4.5_0000787g0120 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.9e-06 56.2 86 57.0
Sp6g37790 Schrenkiella parvula HOM05D002990 ORTHO05D003954 1.9e-06 56.2 52 61.5
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 2.4e-06 55.8 52 61.5
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 2.4e-06 55.8 52 61.5
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 2.4e-06 55.8 33 87.9
TAR625G1487 Trochodendron aralioides HOM05D002990 ORTHO05D003954 2.4e-06 55.8 50 60.0
MBI15_g36822_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D019759 3.2e-06 55.5 31 83.9
BcaC03g13141 Brassica carinata HOM05D002990 ORTHO05D003954 4.1e-06 55.1 52 61.5
QL05p046932 Quercus lobata HOM05D002990 ORTHO05D337851 5.4e-06 54.7 91 46.2
Aa31LG11G5670 Aethionema arabicum HOM05D002990 ORTHO05D003954 9.2e-06 53.9 52 57.7


User provided reference genes

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