Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 3.1e-187 658.3 327 100.0
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.5e-141 506.5 317 77.9
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 7.2e-136 487.6 294 78.2
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.6e-119 432.2 313 67.4
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 8.9e-118 427.6 312 69.9
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 8.9e-118 427.6 300 69.7
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.0e-117 426.4 318 66.0
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.6e-117 426.0 302 70.2
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 5.8e-117 424.9 300 69.7
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.7e-116 423.3 304 69.7
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.4e-115 420.2 308 66.2
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.4e-115 419.5 311 67.5
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 2.7e-114 416.0 308 67.5
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.7e-114 416.0 306 65.0
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 3.5e-114 415.6 279 75.6
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.0e-113 414.1 310 66.1
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.0e-113 412.5 308 66.9
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.1e-112 410.6 315 65.7
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 3.3e-112 409.1 302 67.2
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 4.3e-112 408.7 309 66.3
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 4.3e-112 408.7 315 65.4
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.2e-111 407.1 320 64.7
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 1.6e-111 406.8 308 62.7
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.6e-111 406.8 348 61.5
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-111 406.4 309 65.4
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.1e-111 406.4 309 65.4
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 2.8e-111 406.0 302 64.6
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.8e-111 406.0 320 64.4
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 3.6e-111 405.6 304 64.5
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.6e-111 405.6 310 64.8
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.8e-110 403.3 305 62.3
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.1e-110 402.5 319 64.6
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 6.8e-110 401.4 302 64.6
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.9e-110 401.0 309 64.4
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 4.9e-108 395.2 316 63.3
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 6.4e-108 394.8 316 63.6
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.1e-107 394.0 304 64.5
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 3.2e-107 392.5 309 63.1
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 4.1e-107 392.1 303 65.3
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 5.4e-107 391.7 312 62.5
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 7.1e-107 391.3 307 61.9
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.2e-106 390.6 317 62.8
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 2.1e-106 389.8 309 65.4
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 2.7e-106 389.4 298 63.4
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.7e-106 389.4 310 61.3
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 3.5e-106 389.0 307 63.2
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.5e-106 389.0 295 65.8
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 7.8e-106 387.9 319 59.9
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.7e-105 386.7 314 60.5
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 5.1e-105 385.2 306 64.4
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 6.6e-105 384.8 294 65.6
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 6.6e-105 384.8 303 63.7
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 8.6e-105 384.4 305 63.0
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 7.3e-104 381.3 307 60.9
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.2e-103 380.6 320 61.6
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 4.0e-102 375.6 307 60.3
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 4.0e-102 375.6 310 64.2
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 4.0e-102 375.6 298 66.1
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.5e-101 373.6 299 61.9
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 3.2e-99 365.9 295 64.1
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 9.2e-99 364.4 299 59.9
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.6e-98 363.6 305 59.0
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 3.0e-97 359.4 322 56.2
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 3.0e-97 359.4 307 58.0
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.1e-97 358.6 303 58.7
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.1e-97 358.6 303 58.7
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.1e-97 358.6 303 58.7
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.1e-97 358.6 303 58.7
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 6.6e-97 358.2 299 59.5
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.1e-96 357.5 291 60.1
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.5e-96 357.1 310 61.9
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.9e-96 356.7 298 59.1
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 4.3e-96 355.5 291 59.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 9.6e-96 354.4 391 48.8
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 6.2e-95 351.7 315 57.5
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.4e-94 350.5 314 58.6
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 8.9e-94 347.8 307 58.0
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 3.4e-93 345.9 337 55.2
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.9e-92 342.8 339 54.9
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.9e-92 342.0 339 54.9
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 3.5e-90 335.9 327 54.1
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 2.1e-87 326.6 318 53.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.2e-85 320.9 245 66.1
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.6e-85 319.7 317 55.8
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 3.4e-85 319.3 245 64.5
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.2e-84 316.6 283 57.2
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.6e-79 300.4 208 69.7
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 4.0e-78 295.8 263 58.9
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 2.0e-77 293.5 251 62.2
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.6e-77 293.1 289 51.2
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 3.4e-77 292.7 296 52.0
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 3.0e-73 279.6 216 66.7
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.1e-72 277.7 224 60.7
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.5e-72 276.6 276 54.3
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 7.9e-66 255.0 240 57.9
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 7.4e-64 248.4 212 57.1
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.0e-60 238.0 303 43.6
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.7e-60 237.3 185 67.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.8e-60 236.1 185 66.5
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.1e-59 234.6 242 50.8
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.6e-58 230.7 231 55.0
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.4e-56 221.9 190 60.5
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.4e-56 221.9 190 60.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-55 221.1 190 60.0
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.7e-55 219.5 189 60.8
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.2e-55 218.4 190 59.5
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.1e-54 216.5 190 59.5
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.8e-47 192.6 190 56.3
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.1e-46 191.4 192 55.2
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.6e-45 186.8 204 50.0
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.6e-45 186.8 290 39.7
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.2e-44 183.7 106 80.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.8e-44 183.0 190 53.7
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.0e-41 174.9 344 36.6
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 8.8e-41 171.8 191 48.7
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.4e-38 164.5 103 73.8
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.1e-38 163.3 103 72.8
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.1e-34 150.6 108 68.5
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.4e-33 147.9 189 43.9
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 3.0e-33 146.7 282 33.3
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.0e-30 135.6 121 59.5
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.2e-29 134.8 121 60.3
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.1e-26 122.5 109 61.5
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 1.0e-25 121.7 301 28.9
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 6.8e-25 119.0 68 79.4
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.2e-24 118.2 122 53.3
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.5e-24 115.5 111 56.8
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 4.9e-15 86.3 86 50.0
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 4.9e-15 86.3 86 50.0
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 4.2e-11 73.2 44 70.5
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 1.3e-07 61.6 90 44.4
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-06 57.0 37 73.0


User provided reference genes

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