Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.6e-216 754.6 372 100.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 2.6e-166 589.0 369 78.0
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 3.1e-159 565.5 371 76.3
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.2e-149 532.7 328 79.0
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 2.8e-144 515.8 320 77.5
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 5.9e-142 508.1 334 73.1
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.2e-140 502.3 336 72.6
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 5.5e-140 501.5 337 72.1
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.2e-139 500.4 371 66.3
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-137 493.8 341 71.0
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 3.3e-137 492.3 332 71.1
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.3e-136 490.3 335 70.4
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.2e-136 489.6 375 67.5
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.4e-135 486.9 334 71.6
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 2.4e-135 486.1 353 66.9
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 9.1e-135 484.2 358 65.9
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 2.6e-134 482.6 332 71.4
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 4.5e-134 481.9 332 70.2
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.3e-133 480.3 334 70.4
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.2e-133 479.6 355 66.2
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.2e-133 479.6 332 70.8
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 5.0e-133 478.4 335 69.6
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.0e-133 478.4 328 70.7
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 6.5e-133 478.0 343 66.8
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 8.5e-133 477.6 369 65.3
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 8.5e-133 477.6 341 68.0
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-132 477.2 335 67.5
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.1e-132 477.2 360 65.3
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.5e-132 476.9 326 71.5
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.5e-132 476.9 353 64.9
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.5e-132 476.9 331 71.6
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.9e-132 476.5 332 69.0
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 4.2e-132 475.3 341 67.4
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 4.2e-132 475.3 334 68.3
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 5.5e-132 474.9 333 71.8
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.6e-131 473.4 353 66.3
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.1e-131 473.0 335 69.0
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 2.1e-131 473.0 335 67.5
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 3.6e-131 472.2 335 68.7
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 6.1e-131 471.5 324 70.4
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 8.0e-131 471.1 343 67.1
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.4e-130 470.3 324 70.1
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.8e-130 469.9 358 63.1
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.0e-130 469.2 343 67.1
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 5.2e-130 468.4 321 70.1
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 5.2e-130 468.4 333 70.6
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.2e-129 467.2 334 68.6
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.6e-129 466.1 333 65.5
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 2.6e-129 466.1 324 69.1
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 4.4e-129 465.3 335 68.1
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 5.7e-129 464.9 323 70.0
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.7e-128 463.4 346 63.9
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.7e-128 463.4 332 67.8
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.7e-128 463.4 319 69.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.8e-128 462.6 336 67.0
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 4.8e-128 461.8 362 61.3
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 7.0e-127 458.0 332 65.1
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.0e-127 458.0 322 69.3
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-126 457.2 357 63.3
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.2e-126 457.2 319 69.6
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 2.0e-126 456.4 372 61.8
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 2.7e-126 456.1 338 66.6
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 4.5e-126 455.3 336 66.4
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 5.9e-126 454.9 332 64.8
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 5.9e-126 454.9 343 64.4
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.7e-126 454.5 322 68.9
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.0e-125 454.1 343 64.4
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.2e-125 453.0 333 64.3
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 3.8e-125 452.2 343 64.1
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.8e-125 452.2 332 65.1
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 5.0e-125 451.8 334 63.8
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.1e-124 450.7 338 66.6
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.5e-124 450.3 334 63.5
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.2e-124 448.0 335 66.6
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 7.2e-124 448.0 335 66.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 9.4e-124 447.6 331 65.6
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 8.8e-122 441.0 323 65.0
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.2e-121 440.7 356 63.2
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 4.8e-120 435.3 295 72.2
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 6.3e-120 434.9 363 61.4
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.8e-119 433.3 365 61.4
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 3.1e-119 432.6 356 62.6
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 3.1e-119 432.6 314 67.8
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.0e-117 427.6 334 63.5
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.9e-117 426.0 269 75.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 3.8e-117 425.6 323 65.0
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 4.2e-116 422.2 333 59.8
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 8.0e-115 417.9 324 64.5
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 5.2e-114 415.2 347 57.3
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.8e-114 414.8 332 62.3
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.0e-113 413.3 332 62.0
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 2.6e-113 412.9 390 56.4
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.8e-112 409.5 398 52.8
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.8e-111 406.8 339 58.1
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 7.8e-110 401.4 326 60.7
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.8e-109 399.1 318 61.3
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 8.6e-109 397.9 302 66.9
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.1e-108 397.5 353 56.7
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.2e-107 394.0 268 68.7
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.0e-106 391.0 294 63.3
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.0e-106 389.4 266 71.1
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 3.4e-105 386.0 295 66.8
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 5.7e-105 385.2 281 65.1
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 5.7e-105 385.2 281 65.1
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 9.8e-105 384.4 335 57.0
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 9.8e-105 384.4 380 54.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 8.3e-104 381.3 330 56.7
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 9.2e-103 377.9 325 57.8
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.7e-102 376.3 297 60.6
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 2.7e-102 376.3 299 62.2
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.5e-102 375.9 327 59.6
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 7.3e-100 368.2 241 68.0
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.3e-96 357.5 291 60.1
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.7e-94 349.7 331 55.6
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 2.7e-94 349.7 338 50.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 8.6e-93 344.7 370 50.3
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 3.1e-90 336.3 331 51.7
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 6.8e-90 335.1 302 54.0
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 8.3e-88 328.2 321 56.7
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 2.5e-84 316.6 253 58.9
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 2.1e-83 313.5 326 46.0
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 5.2e-82 308.9 199 73.4
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 9.9e-81 304.7 206 68.4
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 7.6e-73 278.5 177 74.0
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 5.4e-71 272.3 288 45.8
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-68 264.6 211 64.5
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.1e-66 258.1 247 51.0
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.0e-66 256.1 308 46.1
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 4.5e-65 252.7 340 43.5
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 4.9e-56 222.6 285 44.2
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 1.2e-54 218.0 258 41.9
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.3e-51 208.0 136 74.3
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 6.9e-50 202.2 160 58.1
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.1e-47 194.9 159 62.3
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.4e-47 194.5 286 36.4
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.9e-44 184.1 203 49.3
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.4e-39 167.9 213 44.1
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.5e-39 167.2 211 44.5
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 9.3e-39 165.2 131 62.6
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 4.3e-36 156.4 293 35.5
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.0e-32 145.2 159 48.4
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 2.6e-28 130.6 81 75.3
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 2.4e-26 124.0 163 46.6
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 6.5e-24 115.9 285 28.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.8e-21 107.8 117 48.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.1e-20 105.1 180 36.7
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.8e-18 97.8 91 54.9
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.8e-18 97.8 91 54.9
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 5.5e-15 86.3 71 54.9
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 3.3e-12 77.0 59 69.5
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 4.4e-12 76.6 50 78.0
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.7e-11 73.6 112 39.3
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.2e-08 64.3 42 64.3
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 3.8e-08 63.5 55 63.6


User provided reference genes

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