Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 3687.1 1893 100.0
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 2639.4 1957 71.8
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 2488.0 1911 70.4
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 2452.9 1921 68.7
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 2404.8 1911 69.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 2288.5 1964 63.9
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2030.0 1991 56.7
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1985.3 1882 57.2
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1975.7 1623 63.4
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1967.2 1997 55.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1953.7 1972 56.0
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1952.2 1921 56.6
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1947.6 1608 63.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1943.7 1546 64.3
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1939.9 1971 55.2
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1936.8 1968 55.8
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1932.5 1998 54.5
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1929.5 1542 63.8
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1928.3 1635 61.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1921.0 1962 55.6
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1919.4 1962 55.6
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1919.1 1857 57.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1919.1 1946 55.1
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1918.3 1962 55.5
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1917.1 1981 54.6
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1894.0 1849 55.9
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1885.2 1965 53.7
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1878.2 1848 55.8
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1877.8 1830 55.8
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1873.2 2106 51.6
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1872.8 1865 55.7
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1865.9 1961 54.3
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1861.7 1951 54.0
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1847.8 1857 55.0
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1835.8 1926 54.5
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1818.9 1857 54.3
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1817.4 1870 54.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1813.9 1876 54.3
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1807.3 1872 54.2
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1796.9 1867 53.3
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1793.9 1949 53.0
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1793.5 1989 51.7
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1791.2 1861 53.9
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1788.1 1997 50.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1786.9 1873 54.1
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1776.1 1961 51.1
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1775.4 1968 52.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1773.8 1982 51.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1766.1 1948 52.5
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1766.1 1967 52.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1763.8 1830 53.4
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1763.4 1915 52.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1756.9 1951 52.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1754.6 1963 51.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1749.9 1959 50.7
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1749.6 1947 51.0
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1748.4 1836 54.0
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1747.3 1973 51.5
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1739.2 1946 51.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1738.8 1941 51.9
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1734.5 1971 52.1
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1733.8 1884 51.9
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1731.8 2065 50.2
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1726.8 1916 51.8
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1724.1 1983 50.1
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1723.0 1891 52.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1719.1 1834 53.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1719.1 1834 53.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1711.0 1927 51.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1699.9 1980 50.7
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1680.6 1641 58.0
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1679.8 1476 59.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1672.1 1768 52.6
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1671.8 2011 49.4
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1671.0 1926 50.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1668.3 1954 50.0
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1658.3 1987 49.4
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1655.2 1967 49.6
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1652.9 1864 49.9
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1652.9 1334 63.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1649.8 1879 49.7
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1647.9 2015 49.1
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1647.5 1841 50.5
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1645.6 1984 48.6
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1639.8 2008 48.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1639.4 1959 49.1
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1637.9 1698 53.2
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1628.6 1937 50.2
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1628.2 1973 48.4
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1623.6 1863 49.7
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1623.2 1849 50.0
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1619.4 1882 50.0
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1615.1 2046 48.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1612.4 1898 49.5
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1609.7 1951 48.2
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1581.6 2017 47.4
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1453.0 1244 61.3
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1402.5 1474 51.6
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 1367.1 1916 45.4
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1359.7 1967 42.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1263.4 1194 57.9
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1109.4 1821 41.2
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 9.8e-294 1014.6 1129 53.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.7e-293 1012.7 1709 37.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.4e-270 936.4 979 52.8
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 7.6e-270 935.3 1997 34.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 3.9e-266 922.9 1883 34.1
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 6.9e-263 912.1 1740 35.1
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 5.4e-260 902.5 905 54.1
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 4.3e-233 813.1 1174 43.6
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.2e-232 808.9 876 53.3
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 1.2e-222 778.5 1074 45.7
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.3e-216 758.4 1044 43.9
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 3.4e-201 707.2 1097 41.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 5.4e-199 699.9 1165 39.8
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.3e-197 695.3 1457 32.8
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.1e-188 665.6 1806 28.8
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.9e-183 648.3 577 58.9
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 3.6e-171 607.4 815 45.8
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 3.0e-149 534.6 542 54.1
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 9.3e-143 513.1 474 57.8
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.1e-130 471.1 681 41.0
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.2e-120 438.7 571 44.5
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 8.5e-120 436.8 590 42.9
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.3e-117 428.7 546 45.2
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.7e-94 351.3 597 40.0
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 2.0e-92 345.9 280 61.1
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 8.6e-80 303.9 458 41.9
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.4e-60 238.8 363 39.4
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.9e-59 235.7 228 54.8
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.5e-55 222.6 378 39.4
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-51 210.3 181 59.7
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 4.7e-46 191.8 290 38.6
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 6.2e-46 191.4 461 33.4
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 6.4e-43 181.4 346 38.7
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.1e-37 164.1 230 41.3
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.2e-36 160.6 645 28.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 4.5e-36 158.7 160 50.6
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 4.9e-35 155.2 1197 21.1
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.1e-34 154.1 136 54.4
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 4.6e-33 148.7 159 50.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 3.3e-31 142.5 164 46.3
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 4.0e-29 135.6 119 58.8
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.3e-27 130.6 122 54.9
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.2e-25 124.0 215 37.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.2e-25 124.0 113 54.9
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.5e-23 117.1 140 50.7
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 5.6e-23 115.2 80 67.5
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 7.4e-23 114.8 402 25.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 3.1e-21 109.4 94 58.5
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 3.9e-16 92.4 83 57.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 5.7e-15 88.6 56 69.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 9.7e-15 87.8 52 78.8
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.6e-09 69.3 73 47.9
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 7.9e-09 68.2 153 37.3
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.5e-07 63.9 93 37.6
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 3.3e-07 62.8 145 33.1
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 7.4e-07 61.6 80 43.8


User provided reference genes

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