Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 2083.9 983 100.0
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1711.8 995 80.2
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1625.5 994 77.1
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1614.7 997 75.2
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1601.6 989 74.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1575.1 991 73.0
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1558.9 1002 73.1
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1553.9 991 72.0
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1549.3 995 71.4
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1547.7 995 71.6
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1545.4 995 70.9
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1545.0 998 71.0
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1542.7 998 71.2
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1541.6 998 71.1
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1539.6 998 71.2
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1531.9 994 70.3
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1530.8 997 70.6
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1525.4 998 71.2
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1521.1 994 70.7
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1518.8 1001 69.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1515.4 997 69.9
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1514.2 997 70.2
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1514.2 997 69.4
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1513.8 1001 69.7
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1513.0 997 69.0
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1511.9 1001 69.7
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1507.3 996 69.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1505.7 979 71.1
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1500.3 989 69.8
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1497.6 997 69.3
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1497.6 997 69.1
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1493.0 997 68.9
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1492.6 1006 68.6
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1491.5 1000 69.2
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1490.7 997 68.7
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1489.6 997 68.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1487.6 1002 69.1
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1486.9 997 67.7
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1483.0 1078 64.9
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1479.9 992 69.4
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1478.4 989 69.1
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1478.0 985 69.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1476.5 999 68.0
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1473.0 1000 67.3
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1471.8 998 67.6
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1471.8 979 70.1
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1467.6 1003 67.7
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1467.2 1000 67.8
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1462.2 997 68.1
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1461.8 1000 67.9
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1461.0 996 67.8
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1460.7 1004 67.7
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1459.9 993 67.9
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1459.9 993 67.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1453.7 1003 66.9
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1453.3 990 66.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1453.0 990 66.6
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1451.4 1002 67.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1449.9 985 66.7
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1449.9 1003 66.9
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1449.5 990 67.5
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1448.7 990 66.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1448.3 989 68.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1448.0 996 67.3
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1447.6 990 67.2
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1447.6 987 66.7
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1447.6 996 68.2
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1447.6 1009 67.5
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1446.8 990 66.5
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1444.9 986 66.6
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1444.1 990 66.3
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1443.3 979 66.5
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1442.2 995 67.8
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1439.9 989 66.0
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1436.4 1004 66.4
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1431.8 985 66.0
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1416.7 985 67.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1414.8 993 66.3
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1413.7 993 66.3
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1410.2 996 67.1
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1404.0 1010 65.0
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1382.1 940 68.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1374.0 1002 63.0
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1361.7 1017 62.8
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1361.7 1004 63.3
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1335.5 970 63.2
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1333.2 1042 62.1
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1330.1 1048 61.0
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1231.5 749 74.0
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1221.8 847 68.0
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1219.9 820 68.8
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1186.0 781 70.2
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1184.9 755 72.7
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1172.5 1032 54.6
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1157.5 740 71.5
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1157.1 1006 55.6
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1138.3 1003 55.2
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 3.4e-311 1071.6 1020 50.5
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.8e-289 998.4 689 67.2
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 5.3e-283 978.0 1005 49.3
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.5e-253 880.2 507 80.7
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 1.2e-250 870.5 551 72.8
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.4e-228 795.0 571 63.6
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.1e-206 724.5 570 62.5
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.0e-156 556.2 416 64.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.0e-156 556.2 416 64.7
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 2.8e-151 540.4 1386 29.9
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 2.1e-130 471.1 571 44.8
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.8e-105 388.3 584 38.5
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.6e-104 384.4 286 66.4
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 4.7e-90 337.0 247 67.2
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 3.1e-89 334.3 195 75.9
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.1e-83 315.8 260 55.8
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.4e-78 298.9 208 65.4
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.6e-77 295.4 153 83.7
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 2.1e-74 285.0 174 75.9
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 7.1e-70 270.0 154 79.9
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.0e-63 249.6 208 55.3
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 6.7e-52 210.3 185 53.0
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 3.8e-47 194.5 178 56.7
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 2.7e-37 161.8 124 61.3
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.6e-37 161.4 107 69.2
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.7e-34 151.4 96 64.6
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-33 149.8 69 89.9
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 5.3e-33 147.5 70 87.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.2e-32 146.4 69 88.4
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 2.9e-31 141.7 82 78.0
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 3.2e-30 138.3 132 53.0
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.2e-30 137.9 70 80.0
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 3.0e-28 131.7 73 78.1
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 7.7e-24 117.1 66 74.2
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.9e-23 115.2 69 71.0
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 3.2e-22 111.7 96 54.2
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 4.2e-22 111.3 150 44.0
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 2.7e-21 108.6 53 86.8
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 3.7e-18 98.2 80 56.2
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 8.3e-18 97.1 86 53.5
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 4.1e-17 94.7 45 84.4
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 4.1e-17 94.7 45 84.4
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.6e-16 92.8 119 47.1
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 2.7e-16 92.0 45 84.4
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 4.5e-16 91.3 44 77.3
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 7.7e-16 90.5 48 77.1
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.2e-15 89.0 45 80.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.7e-10 72.8 146 34.9
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 1.0e-07 63.5 376 21.8


User provided reference genes

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