Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.6e-152 542.7 277 100.0
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.1e-76 290.8 281 58.0
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 8.7e-66 254.6 275 55.3
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.3e-57 226.1 432 39.6
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 2.4e-55 219.9 237 55.7
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 1.2e-54 217.6 212 56.1
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.4e-52 210.7 159 69.8
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-48 197.2 261 46.4
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 6.3e-48 195.3 288 43.1
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.4e-47 193.4 261 45.6
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.1e-47 192.6 246 46.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.0e-46 190.3 234 47.9
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.0e-46 190.3 224 49.6
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 3.4e-46 189.5 275 46.9
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.7e-46 188.3 262 44.3
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.7e-46 188.3 237 48.1
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 3.8e-45 186.0 249 47.4
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.8e-45 186.0 249 47.4
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.4e-44 184.1 125 70.4
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.2e-44 181.8 289 42.2
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 2.7e-43 179.9 223 49.8
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.7e-43 179.9 139 66.9
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.7e-43 179.1 215 49.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.0e-42 177.9 215 49.3
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.3e-42 176.8 126 72.2
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-42 176.4 203 50.2
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-42 176.4 203 50.2
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 3.0e-42 176.4 126 72.2
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 3.9e-42 176.0 153 57.5
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.2e-42 175.6 215 48.4
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 6.7e-42 175.3 261 43.3
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 6.7e-42 175.3 254 45.3
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.0e-41 173.7 204 49.5
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.6e-41 173.3 156 56.4
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.3e-40 171.0 173 55.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.7e-40 170.6 125 68.0
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.7e-40 170.6 191 52.9
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.2e-40 170.2 199 50.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.8e-40 169.9 254 44.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 4.8e-40 169.1 131 65.6
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 4.8e-40 169.1 197 51.3
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 8.2e-40 168.3 128 64.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.1e-39 167.9 144 61.8
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.8e-39 167.2 188 51.1
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.8e-39 167.2 209 48.8
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.4e-39 166.8 150 58.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.4e-39 166.8 201 51.2
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.4e-39 166.8 201 51.2
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.4e-39 166.8 210 46.2
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.4e-39 166.8 210 46.2
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.4e-39 166.8 265 42.6
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 9.1e-39 164.9 200 49.5
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.2e-38 164.5 126 61.9
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.0e-38 163.7 157 59.9
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.6e-38 163.3 125 64.0
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 2.6e-38 163.3 177 51.4
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 3.5e-38 162.9 127 62.2
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 3.5e-38 162.9 212 45.3
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 4.5e-38 162.5 154 57.8
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.9e-38 162.2 140 58.6
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.9e-38 162.2 203 49.8
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.0e-37 161.4 154 57.1
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.3e-37 161.0 158 58.9
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.7e-37 160.6 140 57.9
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.7e-37 160.6 178 49.4
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 2.9e-37 159.8 153 54.9
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.9e-37 159.8 140 57.9
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 2.9e-37 159.8 153 54.9
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 2.9e-37 159.8 153 54.9
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.9e-37 159.8 140 57.9
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.8e-37 159.5 140 57.1
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.8e-37 159.5 127 67.7
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.8e-37 159.5 126 65.1
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 5.0e-37 159.1 140 57.1
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 6.5e-37 158.7 153 54.2
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 8.5e-37 158.3 140 57.9
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.1e-36 157.9 152 57.2
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.1e-36 157.9 127 60.6
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.5e-36 157.5 122 62.3
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.9e-36 157.1 147 54.4
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.9e-36 157.1 157 59.2
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.5e-36 156.8 143 55.2
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.2e-36 156.4 126 63.5
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.5e-36 155.6 143 56.6
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 7.2e-36 155.2 161 51.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 7.2e-36 155.2 135 60.7
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.6e-35 154.1 121 62.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 2.7e-35 153.3 156 57.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 6.1e-35 152.1 180 48.9
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 8.8e-34 148.3 128 61.7
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 2.0e-33 147.1 174 51.7
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 2.6e-33 146.7 128 60.9
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 7.5e-33 145.2 138 54.3
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.7e-32 144.1 129 56.6
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.8e-32 143.3 142 57.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.4e-31 141.0 128 53.1
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.4e-31 141.0 127 59.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.4e-31 141.0 142 56.3
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 7.7e-30 135.2 222 41.9
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.3e-29 134.4 295 34.9
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 4.2e-28 129.4 123 57.7
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 9.4e-28 128.3 161 46.6
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 9.4e-28 128.3 166 44.6
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.6e-27 127.5 207 41.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 4.7e-27 125.9 252 40.5
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.7e-27 125.9 128 51.6
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.7e-27 125.9 128 51.6
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 9.8e-25 118.2 83 62.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 6.3e-24 115.5 102 55.9
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.4e-23 114.4 104 57.7
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.7e-22 108.6 80 60.0
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 8.5e-21 105.1 102 59.8
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 6.1e-19 99.0 90 57.8
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.4e-18 97.8 247 34.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.6e-17 93.6 89 50.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.0e-14 84.0 173 38.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.9e-13 80.1 207 37.7
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.6e-11 73.2 88 48.9
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 6.1e-11 72.4 69 49.3
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 4.0e-10 69.7 76 50.0
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 6.8e-10 68.9 46 63.0
DCAR_004236 Daucus carota HOM05D006505 ORTHO05D008086 3.4e-09 66.6 231 29.4
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 7.5e-09 65.5 119 37.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 2.9e-08 63.5 85 43.5
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 3.7e-08 63.2 85 42.4
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 4.9e-08 62.8 63 49.2
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 6.4e-08 62.4 63 49.2
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.8e-07 60.8 120 31.7
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 4.1e-07 59.7 105 39.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 9.2e-07 58.5 153 34.6


User provided reference genes

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