Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.8e-243 844.3 410 100.0
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 3.6e-193 678.3 403 78.9
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.2e-193 677.6 410 78.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 9.9e-191 670.2 404 78.0
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.3e-170 602.1 408 68.9
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 6.9e-168 594.3 414 69.1
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.5e-167 593.2 405 69.1
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.2e-165 585.5 408 68.9
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.3e-163 580.1 407 68.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.3e-163 579.3 408 68.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 3.9e-163 578.6 400 66.0
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.5e-162 576.6 388 69.8
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 3.1e-160 568.9 399 66.4
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.0e-160 568.5 401 65.1
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.3e-160 568.2 398 67.8
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 9.0e-160 567.4 400 65.2
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-159 566.6 398 67.3
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-159 566.6 398 67.3
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.6e-159 565.8 400 66.8
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.6e-159 565.8 402 67.9
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.7e-158 563.1 408 65.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.8e-158 562.0 388 68.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 4.9e-158 561.6 400 66.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 8.4e-158 560.8 403 64.8
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.1e-157 560.5 409 63.8
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.6e-156 556.6 402 66.2
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 6.0e-156 554.7 402 65.7
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 7.9e-156 554.3 409 65.0
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-155 553.5 416 63.9
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.3e-155 553.5 392 66.1
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 2.3e-155 552.7 402 65.7
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 3.9e-155 552.0 406 64.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.9e-155 552.0 409 64.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 5.1e-155 551.6 402 65.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.1e-154 550.4 398 65.8
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.1e-154 550.4 394 65.7
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.5e-154 550.1 401 64.6
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 5.7e-154 548.1 403 63.3
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.3e-153 547.0 403 63.8
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-153 547.0 404 63.4
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.8e-153 545.8 392 67.1
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.7e-153 545.4 401 65.1
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.4e-152 543.5 408 64.2
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.4e-152 543.5 400 64.0
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-152 543.5 400 65.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.8e-152 543.1 398 63.6
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.4e-152 542.7 410 64.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 4.0e-152 542.0 408 64.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 4.0e-152 542.0 407 63.9
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 5.3e-152 541.6 409 63.6
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 6.9e-152 541.2 408 64.0
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 9.0e-152 540.8 408 64.0
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.2e-151 540.4 408 63.7
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.2e-151 540.4 408 63.7
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.5e-151 540.0 407 62.7
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.5e-151 540.0 400 64.0
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.6e-151 539.3 401 63.6
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.6e-151 539.3 399 64.2
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.6e-151 539.3 397 64.5
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.6e-151 539.3 409 63.8
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.6e-151 539.3 407 62.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.4e-151 538.9 400 63.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.5e-151 538.5 410 62.9
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.2e-150 536.2 404 62.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.9e-150 535.8 400 64.2
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.9e-150 535.8 400 64.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 6.5e-150 534.6 412 64.6
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 6.5e-150 534.6 409 62.6
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.1e-149 533.9 398 61.6
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.1e-149 533.9 402 61.9
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.5e-149 532.7 400 63.5
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.5e-149 532.7 400 63.2
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 7.1e-149 531.2 398 64.3
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.1e-149 531.2 400 60.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 9.3e-149 530.8 420 61.4
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.2e-148 530.4 401 61.8
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 4.6e-148 528.5 405 61.7
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 7.9e-148 527.7 407 61.9
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 7.9e-148 527.7 398 60.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.0e-147 527.3 399 60.2
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 6.7e-147 524.6 406 60.6
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 5.7e-146 521.5 390 62.3
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 7.4e-146 521.2 399 63.4
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.2e-145 519.6 396 63.1
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.8e-145 518.5 393 62.8
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-144 517.3 393 62.6
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-144 516.9 399 62.7
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.6e-143 512.7 397 62.7
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.6e-143 512.7 402 61.9
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.0e-142 510.8 421 58.7
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-142 510.4 399 61.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.2e-142 509.6 404 61.6
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.9e-142 509.2 397 61.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.8e-142 508.8 388 60.3
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-141 507.3 412 58.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 3.2e-141 505.8 384 59.4
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.2e-141 504.6 396 61.9
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.7e-140 502.7 413 58.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.6e-140 502.3 407 60.9
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.6e-140 502.3 384 61.5
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.4e-139 500.4 384 59.9
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.5e-138 496.9 394 58.1
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.5e-138 496.9 383 59.3
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.7e-138 495.0 392 58.4
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.7e-138 495.0 392 58.4
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.7e-137 493.4 416 59.6
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.7e-137 493.4 394 60.9
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.1e-136 490.7 392 58.4
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.4e-136 490.3 384 58.6
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.1e-136 487.6 386 61.1
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 7.7e-135 484.6 396 57.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 6.5e-134 481.5 384 57.3
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.4e-133 480.3 390 56.2
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.2e-132 477.2 390 56.4
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.9e-132 474.6 373 57.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.9e-132 474.6 373 57.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.3e-129 467.2 397 58.9
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.5e-127 459.1 388 54.9
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 3.0e-123 446.0 407 53.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.4e-120 436.4 392 52.6
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.8e-115 420.2 406 52.5
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.2e-115 418.7 407 49.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 8.8e-115 417.9 400 53.0
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.1e-112 409.1 405 50.1
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 3.5e-111 406.0 398 51.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.2e-105 386.7 399 49.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.3e-105 385.2 375 52.5
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 6.6e-102 375.2 396 47.5
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.1e-101 374.4 410 47.3
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 9.5e-101 371.3 407 48.6
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.8e-100 369.8 403 45.2
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.6e-98 363.2 405 48.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.6e-95 354.0 399 49.4
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.6e-92 344.0 406 46.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.7e-92 342.4 410 47.1
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.3e-85 319.7 398 45.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.8e-83 313.9 406 44.3
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.2e-81 307.0 257 56.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 5.1e-78 295.8 395 42.5
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-75 287.7 184 71.7
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.2e-72 275.0 284 49.6
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 4.6e-71 272.7 398 42.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.6e-60 236.5 426 33.3
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 9.3e-56 221.9 157 61.1
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.0e-54 216.9 227 49.3
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 6.5e-41 172.6 156 55.8
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-40 171.4 394 29.7
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.1e-35 155.2 117 59.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.0e-34 151.0 97 75.3
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.8e-33 146.7 320 30.6
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.5e-26 124.8 77 74.0
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 3.0e-22 110.5 409 27.1
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 8.5e-09 65.9 403 24.3
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.1e-08 65.5 39 71.8
unitig_748.g7722 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-07 60.1 68 52.9
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 6.1e-07 59.7 60 45.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.0e-07 59.3 47 51.1


User provided reference genes

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