Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 4.1e-306 1053.9 526 100.0
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.2e-276 956.1 526 92.6
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 7.2e-271 936.8 524 88.5
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.5e-268 929.1 527 86.1
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.2e-262 909.4 526 86.9
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 2.4e-258 895.2 527 85.8
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 3.9e-256 887.9 520 85.2
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 5.8e-252 874.0 570 78.2
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 9.8e-252 873.2 515 85.0
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 9.5e-247 856.7 510 84.7
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 9.2e-242 840.1 526 79.7
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.0e-236 822.4 528 76.9
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.9e-234 815.8 527 76.9
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 3.2e-234 815.1 527 77.4
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 5.4e-234 814.3 527 76.7
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 9.3e-234 813.5 527 77.4
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 1.2e-233 813.1 526 81.7
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.3e-232 809.7 527 77.2
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 4.4e-228 794.7 528 75.2
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.4e-226 788.9 527 76.1
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 2.1e-225 785.8 527 75.1
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 5.1e-224 781.2 531 75.1
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.3e-222 776.5 530 74.3
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.6e-222 776.2 527 74.2
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 2.1e-222 775.8 527 75.0
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 3.6e-222 775.0 527 73.4
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.8e-221 772.7 530 74.0
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.4e-221 772.3 527 74.0
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.0e-220 769.2 528 74.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 7.6e-220 767.3 527 74.4
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 2.9e-219 765.4 527 73.6
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 2.9e-219 765.4 529 72.4
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.1e-218 763.5 528 73.5
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.9e-218 762.7 527 72.7
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.2e-217 760.0 527 72.9
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 1.6e-217 759.6 529 73.0
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.6e-217 759.6 530 73.4
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.7e-217 758.8 530 71.7
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.3e-216 755.7 525 72.6
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 6.7e-216 754.2 527 72.1
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 4.0e-213 745.0 527 72.5
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 3.4e-212 741.9 517 73.3
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.3e-211 740.0 529 71.5
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 8.4e-211 737.3 527 71.3
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 8.4e-211 737.3 581 66.6
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 5.1e-208 728.0 528 69.5
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.3e-206 723.4 528 68.6
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 6.2e-206 721.1 530 68.9
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 4.1e-205 718.4 529 69.6
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 6.9e-205 717.6 529 69.6
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 2.0e-204 716.1 525 69.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.6e-204 715.7 529 69.2
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 5.8e-204 714.5 533 66.8
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 7.6e-204 714.1 533 67.9
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.0e-203 713.8 525 69.7
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 5.1e-200 701.4 528 68.6
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 5.1e-200 701.4 528 66.9
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.5e-199 699.9 481 73.6
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 3.3e-199 698.7 499 71.7
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 1.3e-198 696.8 531 66.9
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 5.3e-197 691.4 538 65.2
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.2e-196 690.3 525 65.3
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 3.4e-196 688.7 527 66.4
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 4.5e-196 688.3 527 67.2
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 8.5e-195 684.1 525 65.1
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.1e-194 683.7 524 65.5
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-193 680.2 517 67.3
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.6e-193 679.9 528 65.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.7e-193 679.1 524 65.3
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.5e-191 672.5 527 65.3
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.5e-191 672.5 525 65.0
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.3e-190 670.2 535 65.4
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.2e-190 669.5 529 64.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 5.3e-189 664.8 529 65.6
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.2e-188 663.7 528 65.0
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 2.0e-188 662.9 526 66.0
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.6e-188 662.5 526 65.6
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 3.4e-188 662.1 528 64.4
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 5.9e-188 661.4 535 64.3
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.0e-187 660.6 528 64.2
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.3e-187 660.2 529 65.0
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.7e-187 659.8 559 62.6
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.8e-187 658.7 529 64.5
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.4e-186 656.8 524 64.3
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 7.2e-186 654.4 524 63.4
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.2e-185 653.7 525 63.4
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.6e-185 653.3 529 64.3
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.7e-185 651.7 519 65.5
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 6.1e-185 651.4 526 65.2
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 5.1e-184 648.3 526 65.0
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-183 647.1 519 64.9
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 3.3e-183 645.6 516 64.9
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.2e-182 642.9 527 62.4
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 2.2e-182 642.9 550 61.8
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.4e-181 640.2 524 64.1
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.1e-181 638.6 444 73.0
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 7.0e-181 637.9 527 62.2
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.0e-180 636.3 530 62.8
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 5.5e-178 628.2 537 60.7
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 6.7e-176 621.3 442 70.1
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 8.2e-174 614.4 528 61.4
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.9e-171 605.9 526 59.3
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 1.1e-170 604.0 525 61.3
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 1.1e-170 604.0 525 61.5
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 5.2e-168 595.1 530 58.3
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.0e-167 593.2 442 67.6
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.7e-163 580.1 526 57.2
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 9.1e-157 557.8 511 58.1
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.1e-154 550.8 483 60.7
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.0e-144 517.7 368 72.6
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 4.4e-127 459.1 403 61.3
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 7.1e-125 451.8 465 55.3
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.6e-124 450.7 544 46.7
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 2.1e-121 440.3 392 56.9
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 5.1e-115 419.1 532 44.4
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 3.3e-114 416.4 518 44.0
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 2.6e-103 380.2 469 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 8.7e-99 365.2 489 42.9
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.1e-58 231.9 139 82.0
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 3.2e-53 213.8 512 34.0
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 5.7e-42 176.4 127 66.9
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 4.6e-31 140.2 150 55.3
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 5.9e-31 139.8 258 38.8
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.4e-26 123.6 79 74.7
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 4.1e-24 117.1 76 72.4
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 2.7e-23 114.4 72 73.6
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 6.0e-23 113.2 72 79.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-22 109.8 143 38.5
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 2.8e-20 104.4 104 55.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.8e-20 104.4 65 73.8
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 2.4e-16 91.3 253 30.0
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-09 68.6 52 53.8
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.2e-08 64.3 87 44.8
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 9.2e-08 62.8 60 50.0
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 3.5e-07 60.8 56 50.0
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.7e-06 58.5 41 63.4


User provided reference genes

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