Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 0.0e+00 1517.3 777 100.0
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1291.9 751 89.2
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 0.0e+00 1291.2 755 88.3
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 0.0e+00 1242.6 750 86.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 0.0e+00 1154.4 755 81.3
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 767 78.1
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 758 77.0
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1115.5 766 78.5
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1109.0 767 77.8
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1107.4 761 76.6
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1107.4 761 76.6
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 761 75.6
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1076.6 758 74.9
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 3.7e-311 1071.2 784 72.8
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 4.4e-309 1064.3 772 73.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 5.8e-309 1063.9 771 73.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.7e-308 1062.4 772 73.4
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 726 76.0
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 741 75.0
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 9.3e-307 1056.6 749 74.1
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 9.3e-307 1056.6 768 73.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.7e-306 1055.0 783 71.9
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 2.7e-306 1055.0 776 71.5
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 6.0e-306 1053.9 779 73.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 5.1e-305 1050.8 768 72.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.9e-304 1048.9 765 72.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.3e-303 1046.2 778 72.6
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.3e-303 1046.2 768 72.5
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.6e-303 1044.6 780 72.1
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 3.6e-303 1044.6 769 71.9
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-302 1043.1 781 71.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.1e-302 1043.1 777 72.5
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 5.3e-302 1040.8 749 72.8
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 1.2e-301 1039.6 769 71.1
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 7.6e-301 1036.9 738 73.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.3e-300 1036.2 780 70.8
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.7e-300 1035.8 742 72.4
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 2.2e-300 1035.4 761 72.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 777 71.7
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.4e-300 1033.9 766 71.4
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 777 70.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 4.2e-299 1031.2 776 71.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.6e-298 1027.7 774 70.8
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.8e-297 1025.8 766 70.6
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 5.1e-297 1024.2 767 70.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 5.1e-297 1024.2 772 69.8
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 766 70.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 757 71.3
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 3.3e-296 1021.5 775 71.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 5.6e-296 1020.8 760 71.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 7.4e-296 1020.4 777 69.5
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.8e-295 1018.5 764 70.8
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.2e-293 1013.1 770 69.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 9.9e-293 1010.0 701 76.2
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.9e-292 1008.4 782 68.7
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 8.4e-292 1006.9 760 70.3
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.4e-291 1006.1 772 69.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 5.5e-291 1004.2 763 70.1
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.6e-290 1002.7 706 73.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 4.6e-290 1001.1 825 65.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 5.1e-289 997.7 814 67.3
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 6.7e-289 997.3 768 69.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 3.3e-288 995.0 768 68.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.3e-287 993.0 744 71.0
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.1e-287 992.3 755 69.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.8e-286 989.2 686 73.9
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 3.4e-285 984.9 783 67.9
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.2e-282 976.5 689 73.4
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.6e-282 976.1 712 70.8
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.3e-281 972.2 779 68.2
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 2.3e-281 972.2 778 68.3
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.5e-280 969.5 717 70.9
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.5e-280 969.5 840 63.1
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 2.5e-280 968.8 791 66.9
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 9.7e-280 966.8 775 68.3
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 9.7e-280 966.8 775 68.3
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 9.7e-280 966.8 761 68.5
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.3e-279 966.5 775 68.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.8e-279 965.3 714 69.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 6.3e-279 964.1 761 68.1
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 9.0e-278 960.3 776 67.7
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.2e-277 959.9 744 69.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.2e-277 959.9 778 67.7
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 4.5e-277 958.0 779 67.3
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 3.8e-276 954.9 778 67.1
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.1e-275 953.4 771 67.6
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.2e-275 951.8 778 67.9
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.7e-273 944.1 778 66.7
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 6.7e-273 944.1 724 69.9
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 7.4e-272 940.6 641 76.4
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 9.7e-272 940.3 724 69.6
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.1e-270 936.8 719 68.3
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.5e-267 925.6 703 68.4
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.7e-266 922.2 717 66.8
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.5e-264 916.4 741 66.7
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.1e-262 908.7 680 71.6
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 8.0e-226 787.7 630 70.0
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.4e-225 786.9 574 70.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.2e-224 783.9 574 69.9
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 9.5e-219 764.2 700 59.7
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 6.8e-217 758.1 702 59.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 5.2e-209 731.9 704 55.7
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 7.6e-208 728.0 737 54.7
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.2e-207 726.5 714 54.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.3e-193 678.7 530 62.1
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.4e-192 675.6 524 64.3
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.0e-188 664.5 524 63.5
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.8e-176 622.1 532 59.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.8e-172 610.5 414 74.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.0e-160 570.5 387 74.2
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 9.1e-145 518.5 414 62.3
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 4.4e-139 499.6 363 72.5
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-125 454.5 258 83.7
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 7.3e-94 349.4 489 42.9
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.2e-85 322.0 600 39.5
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 6.2e-85 319.7 669 33.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.4e-83 313.9 268 58.6
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-80 305.1 278 59.7
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 5.1e-79 300.1 269 61.3
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.8e-68 265.0 689 30.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.9e-62 245.0 346 45.1
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 4.2e-41 174.1 99 81.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.8e-37 161.4 83 86.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.6e-32 144.4 135 60.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.8e-31 142.1 105 69.5
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 3.7e-21 107.8 130 49.2
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 3.1e-20 104.8 139 46.0
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 9.1e-20 103.2 54 83.3
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 3.0e-15 88.2 103 48.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-13 82.4 59 69.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.5e-11 74.7 74 56.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 4.2e-09 67.8 70 52.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 4.0e-07 61.2 81 42.0
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.6e-06 58.5 79 40.5


User provided reference genes

Program Settings