Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 0.0e+00 1120.9 751 100.0
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.0e-254 883.6 763 78.4
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 8.9e-198 694.5 754 56.0
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 8.9e-198 694.5 754 56.0
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.4e-187 660.6 769 54.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 2.4e-187 659.8 724 52.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 7.9e-178 628.2 720 56.9
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.5e-171 606.7 794 48.7
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.3e-169 600.9 759 55.6
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 4.5e-157 559.3 823 48.0
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 5.9e-157 558.9 809 50.6
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 7.5e-128 462.2 745 40.4
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.3e-127 461.5 774 40.6
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.7e-127 461.1 738 40.5
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 3.1e-126 456.8 756 43.3
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 5.4e-126 456.1 747 41.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 9.1e-126 455.3 687 41.0
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 7.7e-125 452.2 765 39.9
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.2e-123 445.7 773 40.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 8.0e-122 442.2 738 39.4
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.0e-121 441.8 799 38.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 8.8e-121 438.7 738 39.3
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.5e-120 438.0 761 39.6
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 5.7e-120 436.0 690 41.2
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.7e-119 434.5 738 39.0
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 6.3e-119 432.6 286 85.0
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.4e-118 431.4 672 40.8
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 9.2e-118 428.7 721 38.3
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 2.7e-117 427.2 768 38.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.3e-116 424.9 727 39.1
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 3.3e-115 420.2 711 39.5
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 3.3e-115 420.2 352 67.6
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 3.6e-114 416.8 685 39.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 3.6e-114 416.8 755 39.2
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 8.0e-114 415.6 665 40.8
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 8.9e-113 412.1 726 37.7
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 1.5e-112 411.4 694 40.3
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.3e-111 408.3 665 40.6
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.2e-111 407.5 706 40.8
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 4.9e-111 406.4 686 48.1
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 8.3e-111 405.6 730 38.1
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.1e-110 405.2 692 39.6
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.4e-110 404.8 721 40.2
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 7.0e-110 402.5 698 40.1
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 4.6e-109 399.8 689 40.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 7.8e-109 399.1 683 41.6
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.0e-108 398.7 744 40.1
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 2.3e-108 397.5 741 37.9
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.3e-108 397.5 722 39.9
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-107 395.2 688 42.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 7.3e-107 392.5 687 45.7
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.8e-106 390.6 687 38.4
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.8e-105 387.9 747 36.8
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.1e-105 387.1 719 36.7
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 5.2e-105 386.3 689 39.2
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.2e-105 386.3 753 36.4
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 6.8e-105 386.0 678 38.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 8.9e-105 385.6 750 41.5
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.5e-104 384.8 704 53.6
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 3.4e-104 383.6 745 37.0
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.4e-104 383.6 763 35.6
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 4.4e-104 383.3 766 35.5
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.3e-103 381.7 716 53.1
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 2.9e-103 380.6 658 39.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 2.9e-103 380.6 727 40.0
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.7e-103 380.2 688 43.5
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.9e-103 379.8 714 36.8
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.9e-102 377.9 697 35.9
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 5.4e-102 376.3 685 37.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 9.2e-102 375.6 690 38.8
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.2e-101 375.2 689 37.4
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-101 373.6 685 52.4
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 7.8e-101 372.5 687 37.7
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.0e-100 372.1 714 36.6
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.3e-100 371.7 686 37.8
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.0e-100 369.8 710 36.9
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 6.6e-100 369.4 688 52.0
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 2.5e-99 367.5 775 35.7
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 4.3e-99 366.7 682 38.3
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.6e-98 364.8 738 36.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 3.6e-98 363.6 776 33.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.5e-96 358.2 900 32.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.4e-94 351.7 813 34.3
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 4.1e-94 350.1 724 35.8
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.6e-93 348.2 723 35.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 2.7e-93 347.4 777 34.5
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 4.6e-93 346.7 719 34.9
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.6e-92 342.8 684 34.9
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 8.6e-92 342.4 728 35.0
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.1e-91 342.0 744 34.1
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.7e-90 336.7 685 35.0
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.3e-89 334.3 600 38.7
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 2.0e-88 331.3 638 47.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 7.6e-88 329.3 735 42.2
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.3e-87 328.6 698 37.1
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 6.0e-85 319.7 737 51.0
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.6e-80 304.3 593 37.8
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.6e-77 295.0 663 31.8
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.6e-74 283.9 210 66.2
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 4.8e-74 283.5 683 31.8
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.4e-72 277.3 582 37.6
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 5.8e-72 276.6 581 36.7
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.3e-66 258.8 191 64.4
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 6.2e-66 256.5 191 64.4
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.2e-61 242.3 205 63.4
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.0e-56 224.9 234 52.6
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 7.6e-56 223.0 781 34.4
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.3e-55 222.2 689 32.5
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.9e-51 208.4 195 56.4
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.3e-47 195.7 139 69.8
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 4.2e-46 190.7 251 47.0
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.9e-44 184.1 254 42.5
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.1e-44 183.7 662 25.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-41 176.0 650 25.7
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.4e-40 171.0 176 50.0
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.3e-39 169.1 189 50.8
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-37 162.5 249 40.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.1e-33 149.4 199 41.7
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-33 148.3 179 49.2
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 1.9e-30 138.7 242 37.6
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 1.9e-30 138.7 242 37.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.1e-25 122.9 181 40.9
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-22 112.8 100 57.0
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.1e-21 108.6 212 34.4
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.0e-20 106.3 159 41.5
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 5.7e-19 100.5 141 40.4
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.3e-18 99.4 80 61.2
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 6.5e-15 87.0 104 44.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-14 86.3 134 36.6
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.5e-14 85.9 152 38.2
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 2.3e-12 78.6 88 43.2
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.3e-12 78.6 61 60.7
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 4.0e-12 77.8 109 45.0
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.2e-10 72.0 55 67.3
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.1e-09 68.2 191 29.8
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.1e-09 68.2 49 61.2
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.1e-09 67.8 67 50.7
Medtr1g054730 Medicago truncatula HOM05D000559 ORTHO05D000596 9.1e-09 66.6 127 36.2
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 5.9e-08 63.9 123 36.6
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.3e-07 62.8 153 30.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.8e-07 61.2 162 28.4
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 6.5e-07 60.5 135 34.8
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.9e-06 58.9 278 25.2
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.2e-06 58.2 133 30.8
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 3.2e-06 58.2 134 30.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 4.2e-06 57.8 126 31.0
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 5.5e-06 57.4 125 32.8


User provided reference genes

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