Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 2539.6 1320 100.0
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 2135.1 1320 83.0
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 2079.3 1324 81.3
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 2070.8 1379 79.1
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1961.0 1323 78.5
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1939.9 1323 76.7
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1932.1 1322 76.8
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1904.0 1329 73.7
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1823.1 1324 74.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1774.2 1320 73.2
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1773.1 1321 72.9
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1750.7 1324 72.4
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1741.5 1323 71.7
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1471.4 1354 58.9
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1412.5 1371 55.9
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1406.7 1360 56.9
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1399.8 1486 52.7
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1395.9 1349 57.0
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1380.9 1356 56.2
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1380.5 1354 56.4
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1362.8 1353 55.6
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1355.5 1338 56.1
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1352.4 1364 54.9
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1345.5 1348 55.8
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1345.5 1343 55.0
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1344.7 1432 53.8
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1342.0 1337 54.9
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1336.2 1353 54.9
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1334.7 1348 55.4
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1330.9 1353 54.5
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1322.4 1358 53.6
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1300.8 1341 53.6
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1286.2 1335 53.3
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1280.0 1349 54.3
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1279.6 1356 54.5
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1275.0 1350 54.8
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1268.4 1353 55.4
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1263.4 1397 52.0
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1253.8 1351 52.2
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1251.5 1402 52.9
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1241.1 1363 51.4
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1239.2 1391 51.0
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1238.8 1354 52.7
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1238.0 1465 50.7
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1233.8 1343 52.9
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1229.5 1350 51.7
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1229.2 1390 50.7
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1220.3 1389 50.4
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1218.4 1333 51.0
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1216.8 1377 52.7
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1214.5 1378 49.9
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1212.6 1409 52.4
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1208.4 1354 51.0
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1205.3 1362 50.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1191.8 1349 50.8
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1179.1 1344 49.5
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1175.2 1352 49.5
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1155.2 1373 51.4
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1146.3 1339 49.1
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1144.4 1336 49.3
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1139.4 1427 47.5
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1138.3 1386 48.6
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1133.6 1396 47.8
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1130.5 1336 48.2
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1129.4 1354 48.6
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1124.8 1343 48.3
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1123.2 1373 47.4
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1114.0 1339 48.3
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1112.8 1334 48.4
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1110.9 1347 47.7
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1110.5 1355 48.6
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1104.0 1336 49.0
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1103.2 1348 47.7
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1103.2 1420 46.0
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1098.2 1341 47.4
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1097.8 1343 47.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1095.1 1347 47.7
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1094.0 1350 47.5
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1094.0 1350 47.5
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1094.0 1350 47.5
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1092.8 1333 47.9
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1092.4 1363 47.6
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1087.8 1350 47.0
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1083.9 1307 48.6
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1075.5 1356 48.5
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 1.2e-309 1067.0 1338 48.7
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 1.1e-296 1023.8 1063 53.7
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 5.4e-291 1005.0 1262 48.7
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 1.1e-286 990.7 1348 47.8
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 7.6e-285 984.6 1127 50.0
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 3.5e-282 975.7 1356 44.0
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.5e-280 970.3 1345 43.3
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.4e-267 927.2 1342 42.9
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.9e-260 902.9 1291 43.3
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.4e-257 894.0 909 55.0
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 3.5e-229 799.7 919 50.5
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.0e-209 734.9 842 50.8
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.6e-208 730.3 808 51.1
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 6.2e-194 682.6 909 47.3
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.7e-191 674.5 700 53.7
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.1e-186 657.5 709 52.9
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 6.2e-186 656.0 629 62.2
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 3.1e-185 653.7 619 57.5
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.7e-181 640.6 743 50.5
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.7e-172 611.3 824 46.6
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.3e-170 605.1 473 68.9
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 5.8e-160 569.7 1297 32.7
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 5.7e-155 553.1 606 49.3
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.9e-140 503.8 770 41.6
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 3.7e-130 470.7 528 50.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.2e-128 465.7 1333 28.7
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 5.0e-127 460.3 354 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 3.2e-126 457.6 1154 31.5
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 4.1e-121 440.7 1309 27.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.5e-115 422.2 354 61.9
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 3.4e-115 421.0 1348 28.7
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.2e-110 404.1 411 50.9
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 4.4e-107 394.0 481 47.6
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.0e-87 329.7 679 33.0
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 4.1e-81 307.8 238 62.2
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.5e-78 299.3 326 48.2
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.6e-77 294.7 439 38.7
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 2.9e-66 258.5 364 45.6
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.5e-62 246.1 351 41.6
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.6e-59 235.3 312 46.2
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.6e-51 208.8 234 54.3
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.7e-47 194.1 335 35.2
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 2.5e-38 165.6 258 40.7
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 9.0e-36 157.1 301 36.5
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.5e-33 147.9 204 47.5
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.3e-31 142.5 261 34.9
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 3.9e-31 141.7 712 28.5
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.4e-27 128.6 121 56.2
TPR.G24704 Trifolium pratense HOM05D005030 ORTHO05D006490 6.5e-26 124.4 80 82.5
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.8e-23 116.3 99 55.6
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 6.7e-23 114.4 363 27.0
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.4e-22 111.7 113 54.0
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 2.4e-20 105.9 211 37.4
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 5.3e-20 104.8 435 28.5
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.4e-19 102.1 162 40.7
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.5e-19 101.7 433 28.9
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 2.3e-15 89.4 457 21.2
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 9.7e-14 84.0 68 60.3
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 4.1e-12 78.6 85 47.1
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.7e-08 65.9 284 23.2
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 4.7e-08 65.1 79 44.3


User provided reference genes

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