Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1745.7 850 100.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1637.9 854 92.7
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1626.7 853 91.6
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1612.0 853 90.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1520.4 854 85.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1479.9 853 82.4
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1464.1 851 81.8
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1457.6 851 82.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1446.4 851 82.1
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1440.6 851 80.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1434.5 857 80.0
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1425.2 853 80.4
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1421.4 857 79.6
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1388.6 851 78.4
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1367.8 881 77.2
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1353.2 851 77.0
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1278.8 851 70.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1275.4 755 79.1
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1265.4 851 70.4
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1260.7 849 70.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1251.9 852 70.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1241.5 852 68.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 852 68.0
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1236.1 852 68.5
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1235.3 849 68.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1228.8 853 67.8
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1226.5 849 68.4
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1224.9 849 68.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1220.3 857 67.9
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1219.5 848 68.3
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1219.5 850 67.3
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1219.1 854 68.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1218.4 851 67.7
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 857 67.7
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 856 67.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1211.4 849 68.7
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1208.4 851 67.5
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1206.0 849 67.6
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1205.3 857 67.0
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1202.6 859 67.3
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1197.2 974 60.9
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1195.6 867 67.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1194.9 858 67.5
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1191.4 884 64.8
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 814 69.4
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1190.6 852 66.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 858 65.6
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1189.1 853 66.0
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 887 64.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1182.5 852 66.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1181.8 828 68.4
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 851 66.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 854 65.6
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1170.2 812 69.3
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1168.3 807 69.1
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 858 65.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 852 65.1
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 852 66.3
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 856 65.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1153.3 848 65.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 850 64.4
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 851 63.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 858 65.2
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 854 63.8
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1144.4 851 64.3
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1133.6 848 63.2
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1130.2 854 63.7
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1129.8 852 63.8
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 850 64.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1127.1 848 63.3
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1127.1 847 63.4
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 861 63.8
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1122.1 853 63.3
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 849 62.8
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1116.3 886 61.3
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1115.9 850 63.8
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1111.7 855 62.9
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 856 62.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1108.6 855 62.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1103.2 849 62.2
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1102.0 874 62.0
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1099.7 857 62.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 850 60.7
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 889 60.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 846 61.3
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 874 60.8
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 849 62.0
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 859 60.9
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 875 59.1
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 7.0e-308 1060.4 801 63.0
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 4.3e-305 1051.2 856 59.6
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 6.2e-304 1047.3 779 63.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 5.4e-300 1034.2 773 61.4
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.6e-299 1032.7 764 65.1
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.0e-299 1032.3 729 67.4
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 6.2e-296 1020.8 833 58.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.1e-295 1020.0 870 56.7
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 4.4e-294 1014.6 856 59.0
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.2e-292 1008.4 780 60.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 7.1e-292 1007.3 769 61.0
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.6e-291 1006.1 720 66.2
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.7e-291 1005.4 773 60.5
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-290 1003.0 811 59.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 3.9e-290 1001.5 852 57.6
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.1e-290 1001.1 772 60.2
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.5e-289 999.6 773 60.8
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.6e-289 997.7 775 59.7
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.8e-287 992.6 806 59.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 3.1e-287 991.9 783 60.0
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.1e-287 991.9 907 54.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.3e-285 986.5 841 56.8
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-282 976.5 785 59.1
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 8.9e-279 963.8 848 55.1
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.7e-277 959.5 813 57.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.5e-270 936.4 734 60.5
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.2e-269 932.6 856 54.8
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 4.2e-260 901.7 803 56.0
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 4.6e-251 871.7 847 51.8
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 3.2e-244 849.0 648 64.2
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.6e-243 846.7 779 53.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 3.9e-242 842.0 828 51.4
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 6.7e-234 814.7 844 47.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 4.8e-232 808.5 798 50.8
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 7.2e-228 794.7 599 65.1
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-224 783.9 438 82.9
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 8.2e-224 781.2 788 49.5
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.6e-222 776.2 629 60.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.0e-214 750.0 538 68.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 8.0e-211 738.0 463 75.6
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.7e-206 723.0 432 78.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.0e-205 721.1 471 70.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-203 713.8 778 47.9
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.1e-203 713.4 432 75.5
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 6.1e-203 711.8 626 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.1e-196 691.0 747 48.1
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.0e-177 627.1 667 50.2
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.0e-177 627.1 406 75.4
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 4.3e-172 609.4 590 52.2
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.3e-168 597.8 868 39.1
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.1e-156 558.1 324 79.3
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 5.4e-151 539.3 573 51.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.0e-136 491.9 778 39.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 7.9e-134 482.3 269 80.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.4e-117 428.3 434 53.7
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.1e-108 398.7 338 58.0
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.9e-103 381.3 418 51.4
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.6e-102 378.3 397 52.4
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 7.0e-98 362.8 399 51.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 4.8e-91 340.1 242 64.0
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.3e-77 294.7 806 28.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 6.4e-75 286.6 551 32.1
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.7e-72 278.5 167 76.0
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 5.2e-69 266.9 202 60.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.0e-60 238.4 202 57.4
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.8e-54 218.0 139 70.5
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.3e-47 193.4 116 74.1
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 9.9e-44 183.0 100 80.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 3.8e-43 181.0 193 49.7
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.4e-34 152.5 84 88.1
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 4.3e-31 141.0 82 74.4
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 9.6e-31 139.8 193 42.5
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 6.0e-25 120.6 94 62.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 9.6e-23 113.2 69 75.4
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 7.6e-20 103.6 59 86.4
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.3e-19 102.8 69 79.7
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.2e-19 102.1 81 58.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.4e-18 99.4 121 43.8
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 9.3e-18 96.7 95 52.6
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.2e-17 96.3 61 72.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.7e-14 84.7 45 82.2
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 3.1e-13 81.6 70 54.3
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.6e-12 78.6 43 76.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.9e-12 77.4 44 79.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.3e-11 76.3 35 91.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.7e-11 75.9 56 58.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-11 75.5 54 61.1


User provided reference genes

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