Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 4.7e-88 327.8 159 100.0
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.8e-21 105.5 59 89.8
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 3.8e-21 105.5 59 89.8
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.8e-21 105.5 59 89.8
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 4.9e-21 105.1 59 88.1
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-20 104.0 59 88.1
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-20 104.0 59 88.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.4e-20 103.6 59 86.4
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 84.7
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 5.4e-20 101.7 59 86.4
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 7.1e-20 101.3 59 86.4
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 7.1e-20 101.3 59 84.7
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 7.1e-20 101.3 59 84.7
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 7.1e-20 101.3 59 86.4
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 9.3e-20 100.9 59 86.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 1.2e-19 100.5 59 84.7
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.2e-19 100.5 59 84.7
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.2e-19 100.5 59 84.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.2e-19 100.5 59 84.7
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.6e-19 100.1 59 84.7
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 2.1e-19 99.8 59 84.7
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 2.1e-19 99.8 59 84.7
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 2.7e-19 99.4 59 84.7
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.7e-19 99.4 59 84.7
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.7e-19 99.4 59 83.1
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 2.7e-19 99.4 59 83.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.5e-19 99.0 59 83.1
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 3.5e-19 99.0 59 83.1
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 3.5e-19 99.0 59 81.4
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.5e-19 99.0 66 77.3
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 4.6e-19 98.6 59 83.1
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 4.6e-19 98.6 59 83.1
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 4.6e-19 98.6 59 81.4
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.0e-19 98.2 59 81.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 6.0e-19 98.2 59 84.7
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 6.0e-19 98.2 59 81.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 7.8e-19 97.8 59 84.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 7.8e-19 97.8 59 81.4
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 7.8e-19 97.8 59 81.4
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 7.8e-19 97.8 59 84.7
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 84.7
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 81.4
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 81.4
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 81.4
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 79.7
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 1.0e-18 97.4 59 83.1
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-18 97.1 59 83.1
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.3e-18 97.1 59 83.1
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.3e-18 97.1 59 83.1
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-18 97.1 59 83.1
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.3e-18 97.1 59 79.7
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.3e-18 97.1 59 79.7
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 79.7
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 83.1
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 81.4
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 79.7
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 81.4
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 83.1
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.7e-18 96.7 59 79.7
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 2.3e-18 96.3 59 81.4
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.3e-18 96.3 59 83.1
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.3e-18 96.3 59 83.1
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-18 96.3 59 81.4
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 2.3e-18 96.3 59 79.7
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.0e-18 95.9 59 79.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.0e-18 95.9 59 79.7
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-18 95.9 59 79.7
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.0e-18 95.9 59 79.7
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 3.0e-18 95.9 59 83.1
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 79.7
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 81.4
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 78.0
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 81.4
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 3.9e-18 95.5 59 79.7
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 5.1e-18 95.1 59 79.7
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 5.1e-18 95.1 59 78.0
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 5.1e-18 95.1 59 78.0
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 8.7e-18 94.4 59 78.0
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 8.7e-18 94.4 59 79.7
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 8.7e-18 94.4 59 78.0
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-17 94.0 59 81.4
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-17 94.0 59 79.7
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.1e-17 94.0 59 76.3
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.5e-17 93.6 59 76.3
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.5e-17 93.6 59 79.7
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.9e-17 93.2 59 76.3
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.9e-17 93.2 46 95.7
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.5e-17 92.8 59 79.7
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 3.3e-17 92.4 59 76.3
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 3.3e-17 92.4 58 77.6
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 3.3e-17 92.4 59 76.3
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.3e-17 92.4 59 78.0
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.3e-17 92.4 59 78.0
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.3e-17 92.0 48 89.6
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 4.3e-17 92.0 59 74.6
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 5.6e-17 91.7 59 78.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 5.6e-17 91.7 59 74.6
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 5.6e-17 91.7 59 74.6
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 5.6e-17 91.7 59 74.6
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 5.6e-17 91.7 59 78.0
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 5.6e-17 91.7 59 79.7
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.6e-17 90.9 55 85.5
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 9.6e-17 90.9 46 93.5
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 9.6e-17 90.9 66 72.7
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 9.6e-17 90.9 59 76.3
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.3e-16 90.5 59 74.6
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 1.6e-16 90.1 59 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 2.1e-16 89.7 59 72.9
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 2.8e-16 89.4 59 74.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 8.1e-16 87.8 48 85.4
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.1e-15 87.4 79 59.5
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.8e-15 86.7 59 72.9
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 3.1e-15 85.9 64 71.9
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 9.0e-15 84.3 59 71.2
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 5.8e-14 81.6 58 70.7
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.4e-12 76.3 59 62.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.6e-11 73.6 44 86.4
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.6e-11 73.6 44 86.4
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 4.6e-11 72.0 44 84.1
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.7e-10 70.1 44 77.3
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-10 70.1 59 66.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.1e-10 68.6 59 64.4
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 5.1e-10 68.6 64 62.5
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.5e-09 66.2 44 77.3
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 2.5e-09 66.2 45 71.1
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 7.3e-09 64.7 47 74.5
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.3e-08 63.9 33 90.9
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.3e-08 63.9 44 77.3
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.1e-07 60.8 33 84.8
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 6.9e-07 58.2 47 59.6
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 9.0e-07 57.8 37 78.4
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 5.8e-06 55.1 32 75.0


User provided reference genes

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