Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1999.9 1026 100.0
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1843.6 1032 92.4
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1843.2 1028 92.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1776.9 1049 87.8
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1712.2 1019 86.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1711.4 1025 86.0
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1682.9 1025 84.9
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1672.1 1028 84.3
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1668.3 1019 84.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1666.0 1027 83.6
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1664.8 1031 83.9
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1661.0 1060 82.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1638.2 1020 82.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1629.4 1056 81.5
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1607.8 1022 82.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1534.2 1048 75.5
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1531.5 1039 75.7
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1518.1 1039 75.8
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1511.9 1012 76.2
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1507.7 1033 76.1
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1501.1 1031 73.9
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1501.1 1031 74.8
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1500.7 1045 75.0
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1498.0 1039 75.2
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1496.5 1032 75.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1495.7 1039 75.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1494.6 1045 74.8
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1494.2 1033 74.9
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1493.4 1029 75.2
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1491.1 1006 75.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1491.1 1043 74.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1490.7 1033 73.7
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1489.9 1038 75.2
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1483.0 1012 75.8
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1483.0 1046 73.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1474.9 1039 73.9
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1474.5 1031 73.7
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1473.8 1015 75.1
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1466.8 1047 73.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1462.6 1010 74.5
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1461.0 1038 73.4
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1450.3 1040 72.0
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1447.6 1089 70.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1447.2 1028 73.4
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1443.7 1034 73.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1442.2 1039 72.8
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1435.6 1052 72.2
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1035 72.2
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1035 72.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1429.1 1035 72.6
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1428.7 1034 72.1
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1424.8 1026 73.3
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1424.5 1020 73.4
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 1041 72.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 982 75.6
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1421.0 1007 72.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1024 72.8
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 1041 72.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1416.7 1028 72.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1030 71.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1402.9 1033 70.9
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1400.2 1032 71.6
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1400.2 1032 71.6
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1386.7 1018 70.9
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1385.9 1015 70.5
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1013 71.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 1007 71.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 1031 69.1
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1375.9 1014 71.4
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1018 70.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1023 70.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1007 71.3
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1036 68.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1036 69.5
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1368.2 1036 70.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1018 70.4
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1077 67.6
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1363.2 1040 68.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1033 69.5
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1002 70.1
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1022 70.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1020 68.7
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1067 67.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1017 69.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1039 68.5
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1337.8 1039 68.3
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1027 69.3
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 895 77.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1335.5 940 72.9
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1017 69.4
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 894 76.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 1018 67.9
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1327.8 1017 68.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1016 68.9
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1025 67.5
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1323.5 1018 68.9
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1017 68.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1320.8 1013 68.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 1021 68.2
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 990 69.3
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1026 67.3
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1027 67.1
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1307.7 1026 67.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1307.7 1022 67.6
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 931 74.1
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1010 68.1
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1038 65.9
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 1021 67.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 995 68.3
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1280.0 1043 64.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1276.2 1014 67.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1271.9 1014 66.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1269.2 1014 67.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1258.8 1028 64.8
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1257.7 1027 65.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1256.9 1025 65.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1248.8 1030 65.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1211.4 1028 62.6
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1190.6 933 67.6
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1183.3 1014 62.7
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1169.5 1034 62.7
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1148.7 1036 62.1
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1147.5 1040 61.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1138.3 995 61.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1138.3 1014 61.0
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1114.0 1043 58.8
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1107.4 854 67.8
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1106.7 1058 58.3
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.7e-303 1046.2 999 58.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 7.7e-301 1037.3 1041 57.9
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.5e-288 994.2 910 59.0
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.9e-276 955.7 812 65.5
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 8.0e-274 947.6 826 61.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 9.8e-264 914.1 994 52.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.1e-254 882.1 729 67.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.5e-253 879.0 747 66.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 3.7e-247 859.0 1031 48.3
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-239 833.9 995 48.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.8e-239 832.4 977 48.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 4.6e-237 825.5 1021 46.7
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.4e-225 787.3 833 51.6
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.3e-223 780.8 824 53.5
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.9e-203 713.8 726 60.3
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.5e-198 696.8 920 44.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 6.9e-193 678.7 654 56.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 5.7e-187 659.1 832 49.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 8.8e-172 608.6 638 55.3
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.2e-166 589.0 955 39.3
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.6e-157 561.2 676 51.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.5e-155 552.4 636 51.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.0e-148 531.9 638 50.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 5.8e-139 499.6 1152 32.9
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 3.4e-123 447.2 385 58.2
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.5e-118 431.8 645 43.6
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.9e-116 422.9 283 77.7
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-113 415.6 544 47.1
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.3e-103 382.1 243 79.8
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.1e-87 327.0 317 57.7
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 8.7e-87 326.2 273 66.3
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 3.4e-75 287.7 1006 28.8
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.9e-67 260.4 288 54.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 7.2e-57 226.9 921 25.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.8e-55 222.2 213 53.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 6.3e-53 213.8 530 31.3
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.0e-47 196.4 178 56.7
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-41 176.4 175 54.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.1e-41 176.4 249 39.0
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.0e-39 169.9 156 58.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.6e-35 154.5 135 54.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 2.0e-30 139.0 180 48.3
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.7e-29 136.0 129 51.9
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 6.2e-24 117.5 67 85.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.1e-23 115.2 113 50.4
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.0e-23 114.8 79 62.0
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.0e-23 114.8 79 62.0
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 9.9e-14 83.6 63 71.4
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 2.2e-13 82.4 60 75.0
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 1.2e-06 60.1 47 72.3
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 4.4e-06 58.2 46 71.7


User provided reference genes

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