Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 2.0e-234 816.2 732 100.0
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 6.4e-116 422.5 576 88.9
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 1.9e-96 357.8 586 87.7
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 4.8e-87 326.6 579 81.0
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 9.3e-75 285.8 587 72.7
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 2.9e-68 264.2 580 79.5
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 2.5e-64 251.1 580 78.4
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 8.2e-63 246.1 586 71.7
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 1.2e-61 242.3 184 63.6
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 2.2e-60 238.0 184 63.6
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 9.4e-59 232.6 180 61.1
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 6.7e-57 226.5 174 62.1
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 1.1e-56 225.7 179 60.9
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.6e-56 224.6 179 60.3
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.6e-56 224.6 179 60.3
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 4.4e-56 223.8 585 75.6
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 4.4e-56 223.8 585 75.6
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 5.7e-56 223.4 183 60.1
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 7.4e-56 223.0 179 59.8
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 7.4e-56 223.0 174 61.5
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 9.7e-56 222.6 575 64.7
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 2.8e-55 221.1 187 56.7
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.7e-55 220.7 179 59.8
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 8.2e-55 219.5 580 70.0
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 1.8e-54 218.4 588 66.7
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 7.0e-54 216.5 574 64.5
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 1.2e-53 215.7 575 63.8
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 7.7e-53 213.0 179 55.9
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 1.7e-52 211.8 186 57.0
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 6.5e-52 209.9 175 58.9
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 6.5e-52 209.9 587 65.4
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 7.2e-51 206.5 183 54.6
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 9.4e-51 206.1 173 55.5
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 9.4e-51 206.1 572 65.0
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 1.2e-50 205.7 177 58.2
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 1.2e-50 205.7 486 87.7
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 1.6e-50 205.3 191 52.4
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 1.6e-50 205.3 177 52.5
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 4.7e-50 203.8 182 54.9
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 1.8e-49 201.8 178 55.1
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 1.8e-49 201.8 587 66.6
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 3.0e-49 201.1 179 55.9
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 6.7e-49 199.9 180 56.7
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 8.8e-49 199.5 179 53.6
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 1.5e-48 198.7 172 55.2
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 2.0e-48 198.4 179 54.2
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 3.3e-48 197.6 187 50.3
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 1.7e-47 195.3 173 56.6
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 1.7e-47 195.3 183 53.0
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 4.8e-47 193.7 173 54.9
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 6.3e-47 193.4 172 55.2
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 6.3e-47 193.4 172 55.2
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 6.3e-47 193.4 187 50.3
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 8.2e-47 193.0 173 56.1
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 1.8e-46 191.8 171 50.9
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 1.8e-46 191.8 178 51.1
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 9.1e-46 189.5 154 57.8
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 1.6e-45 188.7 179 52.5
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 3.5e-45 187.6 173 54.9
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 2.9e-44 184.5 187 50.8
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 2.9e-44 184.5 180 47.8
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 5.0e-44 183.7 173 49.1
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 8.5e-44 183.0 173 48.6
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 1.1e-43 182.6 182 46.7
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 1.1e-43 182.6 182 46.7
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 3.2e-43 181.0 187 49.7
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 4.2e-43 180.6 187 49.7
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 4.2e-43 180.6 187 49.7
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 4.2e-43 180.6 187 49.7
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 5.5e-43 180.3 178 53.9
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 7.2e-43 179.9 186 50.0
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 9.4e-43 179.5 589 67.1
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 1.6e-42 178.7 173 50.3
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 8.0e-42 176.4 178 53.4
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 1.0e-41 176.0 178 52.2
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 1.4e-41 175.6 168 54.2
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 1.4e-41 175.6 187 50.8
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 2.3e-41 174.9 176 48.9
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 5.2e-41 173.7 191 48.7
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 2.0e-40 171.8 178 51.1
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 2.0e-40 171.8 178 51.1
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.6e-40 171.4 181 49.7
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 2.6e-40 171.4 183 46.4
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 2.8e-39 167.9 166 46.4
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 2.0e-37 161.8 183 42.6
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 2.0e-37 161.8 160 50.6
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 4.2e-35 154.1 168 48.8
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 1.6e-34 152.1 505 72.1
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 1.2e-29 136.0 104 64.4
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 4.3e-27 127.5 104 57.7
COL.COLO4_37044 Corchorus olitorius HOM05D007347 ORTHO05D009296 1.4e-25 122.5 92 62.0
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 1.4e-25 122.5 99 56.6
DCAR_010986 Daucus carota HOM05D007347 ORTHO05D009296 1.1e-14 86.3 93 41.9
MBI03_g44528_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 3.5e-13 81.3 80 46.2
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 2.3e-12 78.6 92 40.2
CARHR264050 Cardamine hirsuta HOM05D007347 ORTHO05D009296 1.1e-11 76.3 69 47.8
SGA_v2.0_scaffold4G02364 Striga asiatica HOM05D007347 ORTHO05D009296 4.3e-11 74.3 85 41.2
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 4.7e-10 70.9 62 53.2
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 7.5e-08 63.5 69 44.9
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 4.9e-07 60.8 182 24.2
ATR0124G055 Amborella trichopoda HOM05D007347 ORTHO05D009296 6.4e-07 60.5 93 28.0
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 6.4e-07 60.5 159 32.1
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 5.4e-06 57.4 174 26.4
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 7.1e-06 57.0 142 27.5
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 9.2e-06 56.6 174 25.9


User provided reference genes

Program Settings