Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 2385.5 1119 100.0
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 2241.1 1117 92.9
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 2213.0 1120 91.9
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 2181.4 1119 90.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 2083.1 1072 90.4
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 2056.6 1122 84.0
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 2036.5 1122 83.4
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 2035.4 1119 83.9
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 2014.6 1123 82.5
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 2004.6 1115 82.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1954.5 1119 79.9
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1954.5 1119 79.8
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1816.2 1110 73.6
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1792.3 1117 72.8
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1784.6 1115 72.8
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1783.8 1113 73.1
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1778.5 1113 72.1
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1778.1 1114 72.8
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1777.3 1113 72.5
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1776.5 1118 73.3
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1775.4 1114 72.8
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1771.9 1113 71.9
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1766.5 1113 72.3
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1112 71.0
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1751.9 1112 70.8
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1735.7 1113 71.1
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1733.8 1128 70.0
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1722.6 1112 70.6
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1721.8 1114 70.6
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1717.6 1113 69.7
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1717.6 1114 70.3
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1717.2 1114 70.5
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1714.9 1110 69.8
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1714.1 1113 70.4
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1713.0 1111 69.8
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1709.9 1111 69.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1697.6 1118 69.2
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1695.2 1074 71.8
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1694.5 1111 68.8
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1692.9 1110 68.8
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1682.9 1066 71.0
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1678.3 1118 69.1
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1676.4 1118 68.2
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1675.2 1117 68.6
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1674.1 1109 68.8
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1669.4 1109 68.0
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1666.7 1109 68.1
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1666.4 1109 68.2
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1663.7 1109 67.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1663.3 1110 67.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1662.1 1110 68.0
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1659.8 1126 67.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1659.8 1109 67.9
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1659.4 1122 68.1
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1110 67.6
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1100 68.3
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1656.7 1102 68.3
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1656.0 1113 68.5
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1655.6 1226 63.9
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1654.4 1110 67.6
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1652.5 1102 67.9
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1652.5 1114 67.2
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1650.2 1111 67.6
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1649.0 1111 67.8
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1648.3 1114 67.3
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1112 68.7
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1643.2 1111 67.5
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1642.5 1102 67.7
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1641.3 1116 67.7
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1632.8 1114 66.4
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1627.1 1107 66.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1624.4 989 74.3
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1623.6 1100 68.3
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1617.8 1096 67.2
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1610.5 1059 69.4
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1607.4 1128 67.0
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1607.4 1125 65.5
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1095 66.8
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1585.1 1111 65.7
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1581.2 1105 66.4
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1578.5 1111 64.4
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1568.9 1124 64.2
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1559.3 1130 63.7
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1495.3 1096 62.3
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1484.9 1165 61.1
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1466.4 1004 67.7
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1411.7 898 72.9
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1391.3 916 69.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1300.0 1133 53.8
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1279.2 1117 54.0
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1263.4 832 69.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1256.5 1119 54.2
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1240.7 1039 56.6
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1236.1 832 68.0
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1181.4 749 70.2
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1163.3 1118 50.2
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1132.9 739 69.1
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1119.4 761 66.9
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1089.3 665 74.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 2.4e-303 1045.8 1131 47.5
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.7e-285 986.5 691 65.6
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.1e-249 867.5 760 56.3
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 2.7e-230 803.1 498 73.9
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 4.3e-220 769.2 537 66.3
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.0e-218 764.6 537 66.3
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 8.9e-210 734.9 568 59.0
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.8e-170 604.4 1500 30.5
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 7.4e-156 555.8 383 67.1
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 5.7e-148 529.6 603 45.8
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 3.5e-137 493.8 282 78.7
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.5e-116 425.2 1110 28.9
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 4.8e-115 420.2 240 77.1
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 5.7e-108 396.7 587 40.5
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.9e-104 384.4 273 68.1
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.1e-90 339.3 196 75.5
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 8.9e-85 319.7 207 71.0
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 3.5e-81 307.8 259 54.8
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 1.4e-77 295.8 174 77.6
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.4e-74 285.0 208 62.0
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 8.7e-64 250.0 156 68.6
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.4e-58 232.6 167 66.5
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 3.0e-56 224.9 130 72.3
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.7e-56 223.8 208 50.0
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 5.1e-48 197.6 121 72.7
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 5.5e-42 177.6 123 67.5
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 7.7e-36 157.1 132 52.3
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 9.4e-34 150.2 105 58.1
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.6e-33 148.3 176 44.3
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 3.6e-33 148.3 192 41.1
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.5e-31 142.9 85 71.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 4.8e-30 137.9 193 39.4
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-29 136.7 81 70.4
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.1e-29 135.2 138 46.4
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.1e-29 135.2 134 47.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.6e-28 132.1 75 73.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 3.2e-26 125.2 132 50.0
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 9.4e-26 123.6 108 53.7
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 4.7e-25 121.3 145 47.6
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.1e-21 108.2 53 84.9
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.6e-20 105.5 116 52.6
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.5e-18 99.0 100 51.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 3.2e-18 98.6 66 57.6
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 4.0e-16 91.7 136 44.1
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 1.1e-13 83.6 85 47.1
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 1.8e-13 82.8 84 45.2
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.8e-13 82.8 44 72.7
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 4.1e-13 81.6 61 59.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.7e-12 79.0 44 68.2
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.5e-12 78.6 44 70.5
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.0e-11 77.0 47 63.8
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 1.7e-11 76.3 47 68.1
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 2.8e-06 58.9 94 35.1


User provided reference genes

Program Settings