Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.9e-248 862.1 440 100.0
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 6.8e-222 773.9 441 91.4
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 5.8e-221 770.8 440 89.8
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 9.6e-192 673.7 444 79.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.6e-191 672.9 440 80.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 4.0e-190 668.3 444 79.5
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.9e-190 667.5 444 79.1
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.6e-189 665.6 440 80.9
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 5.4e-187 657.9 443 78.8
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 5.6e-184 647.9 447 76.5
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 7.3e-184 647.5 447 76.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.2e-179 632.1 450 75.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.8e-175 619.0 441 75.7
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.5e-173 613.2 447 74.3
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 2.6e-165 585.9 309 98.4
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.2e-157 560.5 449 68.6
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.3e-156 557.0 444 68.5
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.4e-155 553.5 443 68.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-155 553.5 443 68.8
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.2e-155 552.0 442 68.1
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.2e-155 552.0 443 69.1
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.6e-154 548.9 452 67.3
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.1e-154 548.1 443 68.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.0e-153 547.4 443 67.0
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.8e-153 546.6 453 67.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.3e-153 546.2 443 68.2
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.5e-152 543.5 452 67.3
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 4.3e-152 542.0 490 63.3
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 2.2e-151 539.7 477 63.7
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.4e-150 537.0 444 67.8
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-149 533.9 444 67.3
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.7e-148 530.0 451 65.4
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 8.5e-148 527.7 449 64.1
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 8.5e-148 527.7 454 65.6
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.2e-147 524.6 452 64.8
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.1e-146 523.1 456 64.3
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.4e-145 520.4 453 64.2
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 6.7e-145 518.1 447 63.1
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 7.4e-144 514.6 447 64.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 2.8e-143 512.7 452 63.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.8e-143 511.9 445 66.1
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.4e-142 510.4 449 63.3
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.4e-142 509.6 459 62.5
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.0e-140 504.2 455 63.3
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.3e-140 503.8 490 59.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.3e-140 503.8 490 59.2
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.9e-140 502.7 450 63.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 5.0e-140 501.9 450 62.7
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.5e-139 500.4 467 61.7
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.9e-139 500.0 452 63.1
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.5e-139 499.6 455 63.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 9.4e-139 497.7 453 63.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 9.4e-139 497.7 458 62.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.4e-139 497.7 438 63.5
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.2e-138 497.3 453 62.5
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.6e-138 496.9 454 63.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.7e-138 496.1 450 61.6
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.6e-138 495.7 449 63.0
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 4.7e-138 495.4 458 62.2
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.1e-138 495.0 449 63.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.0e-137 494.2 437 64.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.4e-137 493.8 470 60.0
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.4e-137 493.8 453 63.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.4e-137 493.8 450 63.6
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.8e-137 493.4 452 62.6
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.2e-137 491.9 449 61.9
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 5.2e-137 491.9 454 62.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 6.7e-137 491.5 442 63.6
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.4e-136 488.8 447 61.5
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 7.4e-136 488.0 454 62.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.1e-134 484.2 447 62.2
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.4e-134 483.8 456 61.0
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 4.1e-134 482.3 445 62.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 7.0e-134 481.5 448 60.3
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.0e-133 479.9 450 61.3
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.6e-133 479.6 447 61.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.9e-132 476.1 450 60.0
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.9e-132 476.1 451 60.5
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.8e-132 475.7 448 60.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.0e-132 475.3 451 60.1
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.5e-131 473.0 445 60.9
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.4e-131 471.1 446 61.2
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.4e-131 471.1 446 61.2
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 2.1e-130 469.9 446 60.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 2.7e-130 469.5 444 60.6
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.3e-129 466.5 431 60.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.0e-128 463.4 448 60.7
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.0e-128 463.4 449 60.1
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 9.7e-128 461.1 445 58.9
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 5.3e-126 455.3 447 58.8
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.5e-125 452.6 446 58.3
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 3.2e-123 446.0 448 58.9
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 4.2e-123 445.7 449 58.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 2.3e-121 439.9 443 57.8
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 8.8e-121 438.0 451 57.4
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.7e-120 435.3 449 55.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 9.8e-120 434.5 450 58.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.3e-119 434.1 433 59.1
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.8e-118 430.3 450 58.4
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.0e-116 424.5 446 57.4
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 5.5e-115 418.7 438 56.6
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.1e-114 416.8 437 56.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 9.8e-112 407.9 450 54.7
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.7e-111 407.1 465 53.8
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 3.2e-110 402.9 443 56.0
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 9.2e-110 401.4 442 52.9
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 6.6e-108 395.2 464 51.7
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-107 393.3 440 54.5
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 4.3e-107 392.5 448 54.9
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.2e-105 385.6 393 56.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.6e-104 383.3 453 52.3
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 7.0e-102 375.2 386 57.5
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.0e-100 369.0 323 62.2
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 6.6e-100 368.6 450 52.0
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.3e-95 354.4 443 51.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.4e-94 350.1 380 57.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.5e-93 346.3 479 49.9
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.6e-93 345.9 451 49.4
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.8e-90 336.7 432 47.7
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.4e-86 324.3 314 59.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.9e-86 323.9 510 43.3
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 7.8e-85 318.5 383 50.9
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.2e-82 311.2 312 58.0
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.9e-71 273.5 169 80.5
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 5.4e-70 269.2 213 68.5
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.6e-68 262.3 450 42.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 7.3e-67 258.8 450 42.4
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.5e-56 223.0 325 45.8
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.6e-56 222.2 357 44.8
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 4.6e-53 213.0 262 46.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 4.6e-53 213.0 262 46.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.6e-50 204.5 144 72.2
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.2e-39 167.5 305 41.6
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-36 157.1 74 100.0
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 3.3e-35 153.7 130 58.5
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.8e-34 149.8 201 45.8
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.6e-32 144.1 106 68.9
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-29 134.8 98 72.4
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.1e-29 134.4 131 55.7
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.1e-29 134.4 131 55.7
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.6e-29 133.7 173 46.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.0e-28 130.6 259 39.8
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.7e-28 129.4 90 73.3
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 8.8e-28 129.0 69 88.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-26 125.2 121 57.0
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 3.1e-25 120.6 86 72.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.2e-24 118.6 68 80.9
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.2e-23 114.4 132 53.8
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.1e-19 102.1 520 26.5
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 1.2e-13 82.0 69 63.8
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.0e-12 77.0 56 71.4
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 1.3e-10 72.0 91 53.8
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 2.2e-07 61.2 127 40.9
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 7.2e-06 56.2 147 30.6
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 9.4e-06 55.8 97 40.2


User provided reference genes

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