Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 5.1e-37 157.1 74 100.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 5.1e-37 157.1 74 100.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.5e-36 154.8 74 98.6
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.5e-36 154.8 74 97.3
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 2.5e-36 154.8 74 97.3
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 3.3e-36 154.5 74 95.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 3.3e-36 154.5 74 95.9
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 5.6e-36 153.7 74 97.3
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 2.1e-35 151.8 74 97.3
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 8.1e-35 149.8 74 94.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.4e-34 149.1 74 93.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 5.2e-34 147.1 74 93.2
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 5.2e-34 147.1 74 93.2
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 6.8e-34 146.7 74 91.9
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 6.8e-34 146.7 74 91.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 8.9e-34 146.4 74 91.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 8.9e-34 146.4 74 91.9
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.2e-33 146.0 74 91.9
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.5e-33 145.6 74 90.5
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.6e-33 144.8 74 90.5
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.4e-33 144.4 74 91.9
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 5.8e-33 143.7 74 90.5
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 5.8e-33 143.7 74 90.5
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 5.8e-33 143.7 74 89.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 5.8e-33 143.7 74 89.2
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.3e-32 142.5 74 90.5
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.3e-32 142.5 74 90.5
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.2e-32 141.7 74 90.5
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.2e-32 141.7 74 89.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.2e-32 141.7 74 90.5
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.9e-32 141.4 74 87.8
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.8e-32 141.0 74 89.2
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 3.8e-32 141.0 74 89.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 3.8e-32 141.0 74 87.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.8e-32 141.0 74 90.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 4.9e-32 140.6 74 87.8
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 4.9e-32 140.6 74 87.8
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 6.4e-32 140.2 74 87.8
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 6.4e-32 140.2 74 87.8
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 6.4e-32 140.2 74 87.8
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 6.4e-32 140.2 74 89.2
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 8.4e-32 139.8 74 87.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 8.4e-32 139.8 74 87.8
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 8.4e-32 139.8 74 86.5
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.4e-32 139.8 74 87.8
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.4e-32 139.8 74 87.8
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.4e-32 139.8 74 87.8
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.1e-31 139.4 74 87.8
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.1e-31 139.4 74 86.5
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.4e-31 139.0 74 87.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.4e-31 139.0 74 87.8
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.4e-31 139.0 73 87.7
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.4e-31 139.0 74 87.8
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.4e-31 139.0 74 86.5
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.4e-31 139.0 74 87.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 2.4e-31 138.3 74 86.5
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.4e-31 138.3 74 86.5
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.4e-31 138.3 74 86.5
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.2e-31 137.9 74 86.5
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.2e-31 137.9 74 85.1
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 3.2e-31 137.9 74 85.1
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.2e-31 137.5 74 86.5
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 5.4e-31 137.1 74 85.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 7.1e-31 136.7 74 85.1
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 7.1e-31 136.7 74 85.1
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 7.1e-31 136.7 74 85.1
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 7.1e-31 136.7 74 83.8
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 9.3e-31 136.3 74 83.8
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.3e-31 136.3 74 85.1
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.2e-30 136.0 74 85.1
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.2e-30 136.0 74 83.8
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.6e-30 135.6 74 86.5
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.6e-30 135.6 74 86.5
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.6e-30 135.6 74 83.8
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.6e-30 135.6 74 83.8
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.6e-30 135.6 74 85.1
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.1e-30 135.2 74 85.1
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.1e-30 135.2 74 85.1
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-30 135.2 74 82.4
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.7e-30 134.8 74 83.8
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.7e-30 134.8 74 83.8
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 3.5e-30 134.4 74 83.8
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 4.6e-30 134.0 74 83.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.0e-30 133.7 74 82.4
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.3e-29 132.5 74 83.8
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.7e-29 132.1 74 81.1
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.7e-29 132.1 74 82.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.7e-29 132.1 74 82.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.9e-29 131.0 67 91.0
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 5.1e-29 130.6 74 82.4
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 5.1e-29 130.6 74 82.4
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 6.6e-29 130.2 72 84.7
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 6.6e-29 130.2 74 81.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 8.7e-29 129.8 81 77.8
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 8.7e-29 129.8 74 83.8
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 8.7e-29 129.8 74 79.7
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.9e-28 128.6 69 88.4
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.5e-28 128.3 65 92.3
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 8.1e-27 123.2 66 86.4
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.1e-26 122.9 74 78.4
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.5e-25 119.0 65 84.6
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.0e-25 118.6 64 84.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.0e-25 118.6 64 84.4
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 2.6e-25 118.2 68 80.9
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 4.4e-25 117.5 65 83.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 5.8e-25 117.1 69 78.3
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 7.6e-25 116.7 65 81.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.6e-25 116.7 65 81.5
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.2e-22 109.4 65 78.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 9.6e-20 99.8 77 62.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.8e-17 90.5 69 65.2
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.9e-16 87.4 69 63.8
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 6.9e-10 67.0 44 68.2


User provided reference genes

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