Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g033130 Medicago truncatula HOM05D004262 ORTHO05D004886 3.5e-124 448.4 233 100.0
Medtr8g011565 Medicago truncatula HOM05D004262 ORTHO05D004886 6.6e-75 284.6 208 75.0
Medtr8g011130 Medicago truncatula HOM05D004262 ORTHO05D004886 8.6e-75 284.3 204 75.5
TPR.G12210 Trifolium pratense HOM05D004262 ORTHO05D004886 3.8e-62 242.3 184 71.7
Medtr7g077430 Medicago truncatula HOM05D004262 ORTHO05D004886 3.4e-47 192.6 184 59.2
Ca_16911_v3 Cicer arietinum L. HOM05D004262 ORTHO05D004886 2.2e-25 120.2 95 64.2
TPR.G18728 Trifolium pratense HOM05D004262 ORTHO05D004886 3.7e-25 119.4 100 61.0
Medtr3g095410 Medicago truncatula HOM05D004262 ORTHO05D004886 1.1e-24 117.9 125 51.2
Psat5g062600 Pisum sativum HOM05D004262 ORTHO05D004886 1.8e-24 117.1 117 53.8
Lj1g0022256 Lotus japonicus HOM05D004262 ORTHO05D004886 4.5e-23 112.5 116 53.4
Lalb_Chr08g0238681 Lupinus albus HOM05D004262 ORTHO05D004886 3.8e-22 109.4 86 62.8
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 1.1e-21 107.8 226 34.5
Phvul.009G147000 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 1.9e-21 107.1 115 45.2
Glyma.04G218102 Glycine max HOM05D004262 ORTHO05D004886 9.4e-21 104.8 120 46.7
Glyma.04G216500 Glycine max HOM05D004262 ORTHO05D004886 1.6e-20 104.0 120 46.7
Glyma.05G045500 Glycine max HOM05D004262 ORTHO05D004886 8.0e-20 101.7 89 56.2
VMungo1309G1096 Vigna mungo HOM05D004262 ORTHO05D004886 6.7e-19 98.6 108 45.4
Glyma.17G127700 Glycine max HOM05D004262 ORTHO05D004886 7.4e-18 95.1 112 46.4
Phvul.003G208800 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 7.4e-18 95.1 112 48.2
VMungo0022G0001 Vigna mungo HOM05D004262 ORTHO05D004886 7.4e-18 95.1 85 55.3
Glyma.04G205700 Glycine max HOM05D004262 ORTHO05D004886 4.8e-17 92.4 114 42.1
arahy.Tifrunner.gnm1.ann1.H08UBS Arachis hypogaea HOM05D004262 ORTHO05D004886 6.3e-17 92.0 122 42.6
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 1.8e-16 90.5 104 44.2
TAR625G1293 Trochodendron aralioides HOM05D004262 ORTHO05D004886 2.4e-16 90.1 92 45.7
arahy.Tifrunner.gnm1.ann1.3RI1TB Arachis hypogaea HOM05D004262 ORTHO05D004886 3.1e-16 89.7 98 48.0
Sabra16G0193600 Salix brachista HOM05D004262 ORTHO05D004886 3.1e-16 89.7 83 50.6
TAR250G0005 Trochodendron aralioides HOM05D004262 ORTHO05D004886 2.0e-15 87.0 105 40.0
TAR381G1254 Trochodendron aralioides HOM05D004262 ORTHO05D004886 2.0e-15 87.0 105 40.0
QL06p030897 Quercus lobata HOM05D004262 ORTHO05D004886 2.6e-15 86.7 90 46.7
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 3.5e-15 86.3 80 48.8
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 3.5e-15 86.3 80 48.8
Medtr1g008910 Medicago truncatula HOM05D004262 ORTHO05D004886 5.9e-15 85.5 63 68.3
CiPaw.04G086800 Carya illinoinensis HOM05D004262 ORTHO05D004886 7.7e-15 85.1 88 46.6
CiPaw.04G087100 Carya illinoinensis HOM05D004262 ORTHO05D004886 7.7e-15 85.1 86 47.7
Prupe.7G207600 Prunus persica HOM05D004262 ORTHO05D004886 1.0e-14 84.7 86 47.7
Cfa002810 Carpinus fangiana HOM05D004262 ORTHO05D004886 1.3e-14 84.3 83 48.2
CANSAT01G2046 Cannabis sativa HOM05D004262 ORTHO05D004886 1.7e-14 84.0 87 46.0
RcHm_v2.0_Chr2g0119261 Rosa chinensis HOM05D004262 ORTHO05D004886 2.9e-14 83.2 112 42.0
Potri.019G004000 Populus trichocarpa HOM05D004262 ORTHO05D004886 8.5e-14 81.6 87 43.7
GSVIVG01026616001 Vitis vinifera HOM05D004262 ORTHO05D004886 1.9e-13 80.5 85 43.5
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 2.5e-13 80.1 79 50.6
FAN23G1672 Fragaria x ananassa HOM05D004262 ORTHO05D004886 4.2e-13 79.3 103 44.7
TWI79G1577 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 5.5e-13 79.0 81 48.1
Manes.13G082100 Manihot esculenta HOM05D004262 ORTHO05D004886 9.4e-13 78.2 109 40.4
DCAR_014352 Daucus carota HOM05D004262 ORTHO05D004886 1.6e-12 77.4 98 37.8
CARHR203550 Cardamine hirsuta HOM05D004262 ORTHO05D004886 2.7e-12 76.6 92 41.3
FAN26G0764 Fragaria x ananassa HOM05D004262 ORTHO05D004886 2.7e-12 76.6 87 46.0
Lj2A589G33 Lonicera japonica HOM05D004262 ORTHO05D004886 2.7e-12 76.6 86 44.2
THA.LOC104818467 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 3.6e-12 76.3 86 39.5
C09p67680 Brassica napus HOM05D004262 ORTHO05D004886 4.7e-12 75.9 98 43.9
BolC9t59530H Brassica oleracea HOM05D004262 ORTHO05D004886 4.7e-12 75.9 98 43.9
Migut.H02473 Erythranthe guttata HOM05D004262 ORTHO05D004886 4.7e-12 75.9 81 45.7
FAN19G0674 Fragaria x ananassa HOM05D004262 ORTHO05D004886 4.7e-12 75.9 103 43.7
MD01G1017000 Malus domestica HOM05D004262 ORTHO05D004886 4.7e-12 75.9 87 41.4
Solyc11g005440.2 Solanum lycopersicum HOM05D004262 ORTHO05D004886 4.7e-12 75.9 85 47.1
Sopen11g001450 Solanum pennellii HOM05D004262 ORTHO05D004886 4.7e-12 75.9 85 47.1
PGSC0003DMG400003967 Solanum tuberosum HOM05D004262 ORTHO05D004886 4.7e-12 75.9 85 47.1
Ciclev10024792m.g Citrus clementina HOM05D004262 ORTHO05D004886 6.1e-12 75.5 105 36.2
Cc07_g17550 Coffea canephora HOM05D004262 ORTHO05D004886 6.1e-12 75.5 82 41.5
FvH4_1g23660 Fragaria vesca HOM05D004262 ORTHO05D004886 6.1e-12 75.5 103 43.7
Thecc.01G119500 Theobroma cacao HOM05D004262 ORTHO05D004886 6.1e-12 75.5 82 43.9
TWI31G0151 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 6.1e-12 75.5 81 44.4
A10p27620 Brassica napus HOM05D004262 ORTHO05D004886 8.0e-12 75.1 95 43.2
BraA02t09267Z Brassica rapa HOM05D004262 ORTHO05D004886 8.0e-12 75.1 81 49.4
BraA10t44814Z Brassica rapa HOM05D004262 ORTHO05D004886 8.0e-12 75.1 95 43.2
Duzib187G1764 Durio zibethinus HOM05D004262 ORTHO05D004886 8.0e-12 75.1 104 37.5
Aa31LG3G17280 Aethionema arabicum HOM05D004262 ORTHO05D004886 1.0e-11 74.7 118 31.4
AL8G42160 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 1.0e-11 74.7 80 45.0
BcaB07g29753 Brassica carinata HOM05D004262 ORTHO05D004886 1.0e-11 74.7 96 43.8
FAN28G2830 Fragaria x ananassa HOM05D004262 ORTHO05D004886 1.4e-11 74.3 103 42.7
Gorai.002G150600 Gossypium raimondii HOM05D004262 ORTHO05D004886 1.4e-11 74.3 82 41.5
Peaxi162Scf00025g02620 Petunia axillaris HOM05D004262 ORTHO05D004886 1.4e-11 74.3 100 39.0
HanXRQChr10g0296711 Helianthus annuus HOM05D004262 ORTHO05D004886 1.8e-11 73.9 104 37.5
HPP92_002646 Vanilla planifolia HOM05D004262 ORTHO05D004886 1.8e-11 73.9 86 43.0
BcaC03g18272 Brassica carinata HOM05D004262 ORTHO05D004886 2.3e-11 73.6 81 48.1
BolC2t12417H Brassica oleracea HOM05D004262 ORTHO05D004886 2.3e-11 73.6 81 48.1
Lsat_1_v5_gn_5_101740 Lactuca sativa HOM05D004262 ORTHO05D004886 2.3e-11 73.6 105 36.2
Nitab4.5_0004021g0030 Nicotiana tabacum HOM05D004262 ORTHO05D004886 2.3e-11 73.6 118 33.9
A02p43420 Brassica napus HOM05D004262 ORTHO05D004886 3.0e-11 73.2 81 49.4
CSS0008059 Camellia sinensis var. sinensis HOM05D004262 ORTHO05D004886 3.0e-11 73.2 80 45.0
Dinv12126 Davidia involucrata HOM05D004262 ORTHO05D004886 4.0e-11 72.8 79 43.0
Gohir.A11G223950 Gossypium hirsutum HOM05D004262 ORTHO05D004886 4.0e-11 72.8 82 41.5
Gohir.D11G226360 Gossypium hirsutum HOM05D004262 ORTHO05D004886 4.0e-11 72.8 82 40.2
PGR119G1219 Punica granatum HOM05D004262 ORTHO05D004886 4.0e-11 72.8 103 34.0
Sp2g27780 Schrenkiella parvula HOM05D004262 ORTHO05D004886 4.0e-11 72.8 82 45.1
SGA_v2.0_scaffold2G01256 Striga asiatica HOM05D004262 ORTHO05D004886 5.2e-11 72.4 82 41.5
AL6G20250 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 6.7e-11 72.0 84 42.9
AT5G64710 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 6.7e-11 72.0 81 43.2
BcaB08g37177 Brassica carinata HOM05D004262 ORTHO05D004886 6.7e-11 72.0 79 45.6
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 6.7e-11 72.0 84 42.9
Sp6g33570 Schrenkiella parvula HOM05D004262 ORTHO05D004886 6.7e-11 72.0 85 41.2
CAN.G516.2 Capsicum annuum HOM05D004262 ORTHO05D004886 8.8e-11 71.6 81 45.7
Dinv15095 Davidia involucrata HOM05D004262 ORTHO05D004886 8.8e-11 71.6 100 36.0
Thhalv10012635m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 8.8e-11 71.6 84 42.9
C02p63520 Brassica napus HOM05D004262 ORTHO05D004886 1.2e-10 71.2 81 48.1
CARHR278700 Cardamine hirsuta HOM05D004262 ORTHO05D004886 1.2e-10 71.2 98 38.8
AT5G09840 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 2.0e-10 70.5 84 39.3
THA.LOC104799402 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 2.0e-10 70.5 86 36.0
Gohir.D11G259666 Gossypium hirsutum HOM05D004262 ORTHO05D004886 2.6e-10 70.1 82 39.0
Rhsim10G0142400 Rhododendron simsii HOM05D004262 ORTHO05D004886 2.6e-10 70.1 82 40.2
Carub.0008s2552 Capsella rubella HOM05D004262 ORTHO05D004886 3.3e-10 69.7 81 43.2
DCAR_001416 Daucus carota HOM05D004262 ORTHO05D004886 4.4e-10 69.3 96 37.5
Nitab4.5_0001582g0040 Nicotiana tabacum HOM05D004262 ORTHO05D004886 4.4e-10 69.3 81 43.2
EL10Ac6g15245 Beta vulgaris HOM05D004262 ORTHO05D004886 5.7e-10 68.9 86 39.5
COL.COLO4_23999 Corchorus olitorius HOM05D000145 ORTHO05D004886 5.7e-10 68.9 81 39.5
Aqoxy5G02078 Aquilegia oxysepala HOM05D004262 ORTHO05D004886 7.5e-10 68.6 97 41.2
COL.COLO4_22393 Corchorus olitorius HOM05D000258 ORTHO05D000153 7.5e-10 68.6 83 37.3
Thhalv10005625m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 7.5e-10 68.6 89 41.6
Duzib147G0824 Durio zibethinus HOM05D004262 ORTHO05D004886 9.7e-10 68.2 82 40.2
MELO3C023273.2 Cucumis melo HOM05D004262 ORTHO05D004886 1.3e-09 67.8 78 41.0
CsaV3_2G018000 Cucumis sativus L. HOM05D004262 ORTHO05D004886 1.3e-09 67.8 85 38.8
Sed0013193 Sechium edule HOM05D004262 ORTHO05D004886 1.3e-09 67.8 80 41.2
Sc16g0004000 Simmondsia chinensis HOM05D004262 ORTHO05D004886 1.7e-09 67.4 83 38.6
Aa31LG1G17200 Aethionema arabicum HOM05D004262 ORTHO05D004886 2.2e-09 67.0 82 37.8
ClCG02G000740 Citrullus lanatus HOM05D004262 ORTHO05D004886 2.2e-09 67.0 83 38.6
Gorai.007G277700 Gossypium raimondii HOM05D004262 ORTHO05D004886 2.2e-09 67.0 82 36.6
Oeu002630.1 Olea europaea HOM05D004262 ORTHO05D004886 3.7e-09 66.2 93 37.6
PSO675G3917 Papaver somniferum HOM05D004262 ORTHO05D004886 3.7e-09 66.2 109 31.2
Sed0020078 Sechium edule HOM05D004262 ORTHO05D004886 3.7e-09 66.2 82 41.5
Hund19612 Selenicereus undatus HOM05D004262 ORTHO05D004886 3.7e-09 66.2 157 28.7
MSTRG.23288 Avicennia marina HOM05D004262 ORTHO05D004886 4.8e-09 65.9 81 40.7
vmacro12820 Vaccinium macrocarpon HOM05D004262 ORTHO05D004886 4.8e-09 65.9 82 37.8
AUR62017940 Chenopodium quinoa HOM05D004262 ORTHO05D004886 6.3e-09 65.5 81 38.3
Os11g0167300 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 6.3e-09 65.5 91 40.7
CDE06G2757 Ceratophyllum demersum HOM05D004262 ORTHO05D004886 8.2e-09 65.1 91 35.2
Actinidia09812 Actinidia chinensis HOM05D004262 ORTHO05D004886 1.1e-08 64.7 81 37.0
Medtr4g098990 Medicago truncatula HOM05D004262 ORTHO05D004886 2.4e-08 63.5 124 34.7
Ah.02g122290 Amaranthus hybridus HOM05D004262 ORTHO05D004886 4.1e-08 62.8 96 37.5
ECA234G3594 Erigeron canadensis HOM05D004262 ORTHO05D004886 4.1e-08 62.8 95 32.6
SalBow8G4827 Salvia bowleyana HOM05D004262 ORTHO05D004886 5.3e-08 62.4 104 32.7
Medtr8g011120 Medicago truncatula HOM05D004262 ORTHO05D004886 2.7e-07 60.1 85 40.0
Os12g0162900 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 3.5e-07 59.7 84 34.5
Medtr8g011570 Medicago truncatula HOM05D004262 ORTHO05D004886 1.0e-06 58.2 85 38.8
Oeu064303.1 Olea europaea HOM05D004262 ORTHO05D004886 1.7e-06 57.4 97 34.0
Hund03495 Selenicereus undatus HOM05D004262 ORTHO05D004886 3.8e-06 56.2 111 31.5
AUR62003631 Chenopodium quinoa HOM05D004262 ORTHO05D004886 5.0e-06 55.8 97 32.0


User provided reference genes

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