Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 4.4e-45 184.1 85 100.0
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 4.0e-22 107.8 51 92.2
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.4e-21 104.8 51 88.2
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.3e-20 102.8 51 86.3
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 2.9e-20 101.7 51 86.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 4.9e-20 100.9 58 74.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 8.4e-20 100.1 61 68.9
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.2e-19 98.2 51 80.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.2e-19 97.8 51 80.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 5.5e-19 97.4 51 80.4
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 9.3e-19 96.7 48 85.4
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.2e-18 96.3 48 85.4
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.2e-18 96.3 51 80.4
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.1e-18 95.5 51 78.4
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.1e-18 95.5 51 78.4
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.7e-18 95.1 51 78.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.6e-18 94.4 48 83.3
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.6e-18 94.4 48 83.3
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 4.6e-18 94.4 48 83.3
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 6.0e-18 94.0 51 78.4
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 6.0e-18 94.0 51 78.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 6.0e-18 94.0 51 78.4
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 6.0e-18 94.0 53 75.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 7.9e-18 93.6 53 77.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-17 93.2 51 78.4
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.0e-17 93.2 51 76.5
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.0e-17 93.2 51 76.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.3e-17 92.8 48 81.2
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.3e-17 92.8 51 76.5
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.3e-17 92.8 51 76.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.3e-17 92.8 52 76.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.3e-17 92.0 51 74.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.3e-17 92.0 48 79.2
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.3e-17 92.0 48 79.2
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 3.9e-17 91.3 51 76.5
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 3.9e-17 91.3 53 69.8
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 5.1e-17 90.9 48 77.1
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 5.1e-17 90.9 53 69.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 5.1e-17 90.9 51 76.5
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 5.1e-17 90.9 51 74.5
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.1e-17 90.9 51 76.5
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 6.7e-17 90.5 50 74.0
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 8.7e-17 90.1 52 78.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 8.7e-17 90.1 51 74.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 1.1e-16 89.7 46 82.6
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.1e-16 89.7 48 79.2
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.1e-16 89.7 50 74.0
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.1e-16 89.7 53 71.7
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.5e-16 89.4 51 74.5
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.5e-16 89.4 50 72.0
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.5e-16 89.4 51 74.5
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.9e-16 89.0 52 76.9
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 1.9e-16 89.0 47 78.7
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.5e-16 88.6 48 79.2
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.5e-16 88.6 45 82.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.5e-16 88.6 45 82.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.3e-16 87.8 50 72.0
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 5.7e-16 87.4 45 80.0
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 5.7e-16 87.4 51 72.5
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 7.4e-16 87.0 52 71.2
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 9.7e-16 86.7 48 77.1
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 3.7e-15 84.7 53 67.9
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.7e-15 84.7 49 71.4
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 6.3e-15 84.0 51 64.7
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 6.3e-15 84.0 49 69.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.3e-15 84.0 47 76.6
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 8.2e-15 83.6 51 68.6
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.2e-15 83.6 50 70.0
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 8.2e-15 83.6 56 60.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.1e-14 83.2 48 68.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.4e-14 82.8 49 69.4
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.4e-14 82.8 49 69.4
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.8e-14 82.4 46 71.7
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.4e-14 82.0 73 53.4
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.4e-14 82.0 56 58.9
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.1e-14 81.6 50 66.0
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 3.1e-14 81.6 49 67.3
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.1e-14 81.6 48 70.8
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.1e-14 81.6 48 70.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.1e-14 81.6 48 72.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 3.1e-14 81.6 53 62.3
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.1e-14 81.3 50 64.0
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 6.9e-14 80.5 49 67.3
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 6.9e-14 80.5 49 67.3
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 6.9e-14 80.5 48 72.9
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 9.0e-14 80.1 51 60.8
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 9.0e-14 80.1 46 71.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.5e-13 79.3 45 73.3
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.6e-13 78.6 52 61.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.6e-13 78.6 49 65.3
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.4e-13 78.2 47 68.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.4e-13 78.2 48 64.6
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 4.5e-13 77.8 49 65.3
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 4.5e-13 77.8 48 68.8
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 4.5e-13 77.8 46 69.6
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 5.9e-13 77.4 49 59.2
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 5.9e-13 77.4 47 66.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.7e-13 77.0 48 66.7
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.0e-12 76.6 49 63.3
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.0e-12 76.6 45 64.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.7e-12 75.9 47 66.0
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 6.5e-12 73.9 48 62.5
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.1e-11 73.2 49 55.1
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.1e-11 73.2 49 55.1
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.1e-11 73.2 48 60.4
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.9e-11 72.4 44 63.6
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.9e-11 72.4 44 63.6
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.9e-11 72.4 44 63.6
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.5e-11 72.0 42 69.0
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 4.2e-11 71.2 43 65.1
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.6e-10 69.3 43 62.8
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.6e-10 69.3 43 62.8
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.7e-10 68.6 44 63.6
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.4e-09 66.2 44 59.1
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.4e-09 66.2 50 52.0
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 3.0e-09 65.1 45 60.0
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.9e-09 64.7 44 61.4


User provided reference genes

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