Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g030960 Medicago truncatula HOM05D004707 ORTHO05D005837 3.9e-51 204.5 105 100.0
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 2.2e-09 65.9 103 37.9
Medtr8g031050 Medicago truncatula HOM05D004707 ORTHO05D005837 8.3e-09 63.9 56 57.1
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 3.1e-08 62.0 103 36.9
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 5.4e-08 61.2 103 35.9
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 7.0e-08 60.8 100 37.0
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 7.0e-08 60.8 103 35.9
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 7.0e-08 60.8 103 37.9
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 7.0e-08 60.8 103 35.9
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 1.6e-07 59.7 103 36.9
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 1.6e-07 59.7 103 36.9
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 2.0e-07 59.3 103 35.9
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 2.0e-07 59.3 103 36.9
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 2.7e-07 58.9 103 35.9
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 2.7e-07 58.9 103 35.0
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 3.5e-07 58.5 100 38.0
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 3.5e-07 58.5 100 38.0
Medtr8g031060 Medicago truncatula HOM05D004707 ORTHO05D005837 3.5e-07 58.5 56 53.6
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 5.9e-07 57.8 103 35.9
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 5.9e-07 57.8 103 36.9
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 5.9e-07 57.8 100 33.0
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 7.7e-07 57.4 103 36.9
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 7.7e-07 57.4 78 38.5
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.0e-06 57.0 100 37.0
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 1.3e-06 56.6 103 35.0
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 1.3e-06 56.6 103 33.0
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.3e-06 56.6 103 33.0
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 1.3e-06 56.6 103 34.0
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 1.3e-06 56.6 103 35.9
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 1.3e-06 56.6 108 33.3
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 1.7e-06 56.2 103 35.0
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 1.7e-06 56.2 103 35.0
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 1.7e-06 56.2 103 34.0
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 1.7e-06 56.2 103 35.0
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 1.7e-06 56.2 100 35.0
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 1.7e-06 56.2 103 35.9
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.7e-06 56.2 102 37.3
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.7e-06 56.2 100 37.0
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 2.3e-06 55.8 103 33.0
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 2.3e-06 55.8 100 33.0
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 2.9e-06 55.5 103 35.0
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 2.9e-06 55.5 103 35.0
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 2.9e-06 55.5 103 35.0
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 2.9e-06 55.5 100 35.0
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.9e-06 55.5 103 34.0
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 3.8e-06 55.1 100 35.0
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 3.8e-06 55.1 102 37.3
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 5.0e-06 54.7 103 34.0
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 5.0e-06 54.7 103 34.0
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 5.0e-06 54.7 100 35.0
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 5.0e-06 54.7 103 33.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 5.0e-06 54.7 100 31.0
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 6.6e-06 54.3 97 34.0
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 6.6e-06 54.3 99 33.3
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 6.6e-06 54.3 100 34.0
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 6.6e-06 54.3 100 33.0
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 8.6e-06 53.9 100 34.0
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 8.6e-06 53.9 103 34.0


User provided reference genes

Program Settings