Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.7e-264 915.6 532 100.0
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 8.1e-169 597.8 544 69.3
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 3.3e-162 575.9 550 67.5
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.5e-154 550.4 551 65.0
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 5.6e-146 521.9 583 60.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-143 513.8 546 59.7
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 7.6e-135 485.0 615 56.7
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 5.7e-130 468.8 552 53.1
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 6.3e-129 465.3 593 56.5
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.8e-128 463.8 549 54.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.4e-128 463.4 543 54.5
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.5e-127 460.7 607 48.4
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 5.1e-123 445.7 619 48.9
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.1e-122 444.5 554 53.6
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 9.7e-122 441.4 583 52.3
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 2.6e-119 433.3 538 49.1
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 4.5e-119 432.6 561 48.5
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 3.8e-118 429.5 514 53.1
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 4.2e-117 426.0 580 50.3
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.3e-115 420.2 536 52.1
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.0e-114 417.2 549 49.9
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 5.7e-114 415.6 569 50.3
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.1e-112 409.8 572 49.5
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.2e-111 407.9 548 54.9
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.2e-111 407.9 576 46.5
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 2.9e-110 403.3 570 48.9
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 5.0e-110 402.5 584 50.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 8.5e-110 401.7 546 52.4
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 5.5e-109 399.1 547 52.3
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 7.2e-109 398.7 540 53.1
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.6e-108 397.5 569 45.9
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.4e-107 394.4 588 50.0
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 2.3e-107 393.7 567 50.8
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 2.3e-107 393.7 546 47.8
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.0e-106 390.6 550 49.5
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.7e-106 389.0 552 52.4
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 5.7e-106 389.0 551 49.5
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 7.4e-106 388.7 545 45.5
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.7e-105 387.5 499 50.1
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.7e-105 387.5 535 49.0
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 8.2e-105 385.2 545 48.3
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.4e-104 384.4 596 45.8
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 3.1e-104 383.3 617 44.9
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 4.1e-104 382.9 608 45.9
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.6e-103 380.9 544 48.2
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.6e-103 380.9 615 46.5
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.0e-102 378.3 565 51.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.9e-102 376.7 557 50.6
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 3.8e-102 376.3 569 49.4
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 8.5e-102 375.2 619 44.9
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.1e-101 374.8 511 45.0
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.5e-101 374.4 555 51.0
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.5e-101 374.4 580 49.1
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 4.2e-101 372.9 562 50.9
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 1.6e-100 370.9 502 49.0
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.7e-100 370.2 552 47.8
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 3.6e-100 369.8 559 50.4
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 3.6e-100 369.8 559 50.3
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.3e-99 367.1 558 48.9
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 6.7e-99 365.5 553 49.7
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.1e-98 364.8 543 47.9
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 4.4e-98 362.8 530 50.0
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.3e-97 361.3 564 42.7
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.2e-97 360.5 558 48.6
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 2.2e-97 360.5 553 48.6
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 6.3e-97 359.0 265 83.4
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 6.3e-97 359.0 652 42.2
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.3e-96 355.9 544 48.5
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 9.1e-96 355.1 491 52.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 9.1e-96 355.1 541 48.2
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 1.6e-95 354.4 603 45.6
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 2.9e-94 350.1 541 46.6
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.8e-94 349.7 543 50.6
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.9e-93 347.4 542 47.8
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.9e-93 347.4 542 47.8
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 4.2e-93 346.3 541 45.8
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.6e-92 344.4 533 48.2
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.7e-92 343.6 557 47.9
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.8e-91 340.9 594 44.3
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 5.7e-90 335.9 556 46.8
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.7e-90 335.9 557 49.4
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 5.7e-90 335.9 541 45.5
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 9.8e-90 335.1 564 45.6
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 3.1e-88 330.1 506 48.0
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.3e-86 324.7 554 46.6
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.2e-86 323.9 523 45.9
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.2e-85 319.7 480 50.2
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.2e-84 318.2 228 68.9
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 3.4e-82 310.1 280 59.6
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.2e-79 301.6 501 47.9
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 2.7e-79 300.4 554 43.0
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 8.6e-78 295.4 188 81.9
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 9.5e-77 292.0 513 47.8
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 8.0e-76 288.9 540 43.0
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.0e-75 288.5 628 41.1
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 8.3e-73 278.9 280 53.9
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 8.3e-73 278.9 549 45.2
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 9.2e-72 275.4 372 55.4
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 4.6e-71 273.1 423 43.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-70 270.0 223 65.0
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 2.5e-69 267.3 148 84.5
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.4e-66 256.9 229 56.3
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-64 251.5 158 81.6
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.4e-64 251.5 485 40.8
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 2.1e-60 237.7 597 33.5
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.6e-60 236.9 212 56.1
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.8e-59 234.6 242 52.1
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 5.2e-59 233.0 167 66.5
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.0e-58 231.1 166 66.3
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 5.8e-58 229.6 217 54.8
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 5.8e-58 229.6 149 69.1
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 5.8e-58 229.6 113 92.0
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.9e-57 227.3 152 69.1
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 4.9e-57 226.5 268 60.8
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 8.3e-57 225.7 179 63.7
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.1e-56 225.3 148 69.6
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 2.4e-56 224.2 177 62.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 9.2e-56 222.2 575 37.9
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.7e-55 220.7 113 85.8
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 2.7e-55 220.7 227 53.7
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.7e-54 218.0 157 76.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 8.6e-54 215.7 217 52.5
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 1.9e-53 214.5 258 60.1
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 2.3e-51 207.6 149 64.4
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.4e-48 198.4 490 42.9
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 3.1e-43 180.6 427 39.3
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.1e-39 167.9 86 83.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.1e-39 167.9 86 83.7
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.9e-37 161.4 195 47.7
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.1e-36 157.9 473 34.0
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.6e-36 157.1 377 47.5
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.6e-36 157.1 377 47.5
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 9.0e-35 152.5 225 37.8
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 4.9e-33 146.7 148 63.5
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 8.4e-33 146.0 161 59.6
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 9.3e-32 142.5 105 76.2
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 2.1e-28 131.3 214 38.3
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.0e-26 124.8 143 60.1
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 4.5e-26 123.6 129 62.8
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.9e-25 120.2 98 60.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.3e-22 112.1 279 39.4
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.6e-20 105.1 123 50.4
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.6e-18 97.8 56 71.4
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.9e-17 93.6 66 62.1
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 5.5e-16 90.1 165 39.4
Medtr4g081725 Medicago truncatula HOM05D004380 ORTHO05D005134 1.2e-15 89.0 100 51.0
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.5e-13 81.3 92 52.2
TPR.G23078 Trifolium pratense HOM05D004380 ORTHO05D005134 1.3e-12 79.0 42 90.5
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 8.2e-12 76.3 76 52.6
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-11 75.9 115 36.5
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.5e-10 72.0 97 43.3
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 5.9e-10 70.1 64 57.8
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 1.0e-06 59.3 59 54.2
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 1.0e-06 59.3 81 42.0
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 2.3e-06 58.2 40 75.0


User provided reference genes

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