Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 1.6e-169 599.4 306 100.0
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 3.1e-165 585.1 306 98.0
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.5e-156 556.2 306 92.8
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 3.6e-153 545.0 306 91.2
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 2.9e-139 498.8 306 83.3
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 8.5e-139 497.3 306 83.3
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 8.5e-139 497.3 306 83.3
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 2.5e-138 495.7 306 84.0
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 4.7e-137 491.5 306 82.4
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 1.4e-136 490.0 304 83.2
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 2.3e-128 462.6 306 76.5
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 8.9e-128 460.7 308 77.9
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 3.4e-127 458.8 305 78.0
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 9.8e-127 457.2 306 76.5
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 1.3e-126 456.8 304 77.3
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 1.7e-126 456.4 306 76.5
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 1.7e-126 456.4 306 76.8
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 2.8e-126 455.7 306 75.8
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.8e-126 455.7 306 75.8
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 4.9e-126 454.9 306 75.5
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 1.1e-125 453.8 304 77.0
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 1.4e-125 453.4 306 75.8
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 1.4e-125 453.4 306 76.8
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.4e-125 452.6 306 74.8
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 4.1e-125 451.8 306 76.1
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 4.1e-125 451.8 306 76.1
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 4.1e-125 451.8 304 77.0
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 4.1e-125 451.8 304 77.0
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 5.4e-125 451.4 305 76.4
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 5.4e-125 451.4 305 76.4
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 7.0e-125 451.1 306 75.8
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 7.0e-125 451.1 306 74.5
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 7.0e-125 451.1 306 74.5
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 9.2e-125 450.7 305 75.7
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 9.2e-125 450.7 306 74.5
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 2.7e-124 449.1 306 74.8
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 4.5e-124 448.4 306 75.2
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 1.7e-123 446.4 305 75.4
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 1.7e-123 446.4 306 74.2
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 2.5e-122 442.6 304 75.7
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 5.6e-122 441.4 306 74.2
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 7.3e-122 441.0 306 73.5
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 2.1e-121 439.5 306 74.2
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 1.8e-120 436.4 306 73.2
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 2.3e-120 436.0 304 73.4
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 2.3e-120 436.0 303 73.3
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 3.1e-120 435.6 304 74.3
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 3.1e-120 435.6 306 72.9
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 6.8e-120 434.5 303 73.3
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 6.8e-120 434.5 306 73.2
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.5e-119 433.3 304 72.7
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 2.6e-119 432.6 306 72.5
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 3.4e-119 432.2 306 73.2
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 3.4e-119 432.2 306 72.2
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 4.4e-119 431.8 306 72.2
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 7.5e-119 431.0 304 72.7
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 7.5e-119 431.0 306 72.9
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 4.9e-118 428.3 306 72.2
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 8.3e-118 427.6 306 70.6
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 1.4e-117 426.8 302 72.5
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 7.0e-117 424.5 298 72.5
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 9.2e-117 424.1 306 71.9
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 1.6e-116 423.3 305 70.8
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 6.0e-116 421.4 306 70.3
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 1.7e-115 419.9 306 70.3
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 5.0e-115 418.3 303 70.3
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 2.5e-114 416.0 303 69.3
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 3.3e-114 415.6 303 70.0
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 1.1e-112 410.6 303 68.6
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 1.1e-112 410.6 306 70.3
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 1.4e-112 410.2 303 68.0
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 2.3e-112 409.5 309 67.6
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 4.0e-112 408.7 303 69.3
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 1.2e-111 407.1 305 68.5
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 1.2e-111 407.1 303 67.7
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 2.0e-111 406.4 303 69.3
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 2.0e-111 406.4 303 69.3
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 5.8e-111 404.8 303 67.3
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 5.8e-111 404.8 303 70.0
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 7.5e-111 404.4 308 69.8
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 1.7e-110 403.3 303 67.3
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 1.7e-110 403.3 305 68.5
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 2.2e-110 402.9 305 68.2
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 1.1e-109 400.6 296 70.9
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 1.4e-109 400.2 303 68.0
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 2.4e-109 399.4 303 67.0
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 5.4e-109 398.3 303 66.7
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 5.4e-109 398.3 303 66.7
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 5.4e-109 398.3 303 66.7
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 9.2e-109 397.5 303 68.0
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 1.6e-108 396.7 278 73.4
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 1.6e-108 396.7 309 66.0
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 2.3e-107 392.9 314 66.2
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 6.6e-107 391.3 290 69.7
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 3.6e-105 385.6 306 65.7
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 2.7e-100 369.4 253 73.1
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 6.0e-100 368.2 253 74.7
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 5.2e-96 355.1 308 58.8
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 1.5e-95 353.6 304 60.5
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 5.4e-93 345.1 306 58.8
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 2.8e-89 332.8 229 73.8
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 1.1e-88 330.9 217 76.0
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 6.9e-88 328.2 236 70.3
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 2.0e-87 326.6 223 74.9
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 2.0e-87 326.6 263 65.0
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 3.8e-86 322.4 237 69.6
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 1.4e-85 320.5 257 62.6
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 1.9e-85 320.1 252 64.7
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 4.2e-85 318.9 280 57.9
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.1e-84 316.6 227 69.6
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.6e-84 315.5 223 71.3
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 4.5e-79 298.9 339 49.0
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 3.0e-67 259.6 304 52.6
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 2.2e-62 243.4 175 69.1
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 2.8e-57 226.5 317 41.6
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 6.3e-41 172.2 140 61.4
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 4.1e-40 169.5 345 35.9
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 3.5e-39 166.4 177 48.6
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 2.2e-38 163.7 165 55.2
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 5.0e-38 162.5 118 70.3
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 5.5e-37 159.1 306 38.2
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 3.0e-27 126.7 92 68.5
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 5.7e-26 122.5 72 77.8
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 2.2e-25 120.6 89 65.2
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 2.2e-25 120.6 91 65.9
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 3.5e-23 113.2 352 29.8
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 3.8e-22 109.8 87 69.0
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 1.2e-20 104.8 65 87.7
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 1.4e-19 101.3 135 48.1
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 3.5e-15 86.7 59 61.0
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 7.2e-13 79.0 46 82.6


User provided reference genes

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