Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.5e-243 845.9 458 100.0
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 4.1e-145 518.8 360 79.4
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 5.7e-131 471.9 413 69.0
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 5.6e-126 455.3 381 68.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 2.3e-124 449.9 382 67.8
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.2e-123 447.6 446 63.0
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 3.2e-113 412.9 421 60.3
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 2.4e-108 396.7 360 64.7
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.3e-106 391.0 406 58.4
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 3.3e-102 376.3 392 59.9
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.1e-89 334.7 415 53.5
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 4.2e-73 279.6 392 47.4
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 9.3e-73 278.5 277 61.4
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 4.6e-72 276.2 414 46.6
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 3.4e-67 260.0 406 44.6
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 5.9e-67 259.2 397 45.3
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.2e-66 257.3 265 61.9
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 2.2e-66 257.3 389 45.0
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.2e-65 253.4 405 43.2
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-65 253.1 283 57.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.9e-62 244.2 406 42.6
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.2e-61 240.7 359 44.6
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.7e-61 240.0 366 47.8
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 4.8e-61 239.6 389 43.2
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.1e-60 238.4 440 41.8
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.4e-60 238.0 402 42.8
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.8e-60 237.7 416 42.1
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 5.3e-60 236.1 451 39.2
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.9e-60 235.7 442 41.9
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 9.1e-60 235.3 391 43.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.5e-59 234.6 450 39.8
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.5e-59 233.0 450 39.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-58 231.5 450 39.3
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.3e-58 231.5 437 40.5
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.2e-58 230.7 419 42.2
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.9e-58 230.3 449 39.2
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.1e-57 228.4 420 43.8
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.5e-57 226.1 448 39.5
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.1e-56 224.2 385 42.3
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 6.1e-56 222.6 388 41.8
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 7.9e-56 222.2 387 43.2
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 8.8e-55 218.8 385 41.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.5e-54 218.0 362 42.8
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.5e-54 218.0 309 49.5
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 5.7e-54 216.1 450 39.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 9.1e-52 208.8 389 40.9
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.6e-51 207.2 386 39.6
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 4.5e-51 206.5 278 47.8
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 5.9e-51 206.1 384 40.6
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.7e-50 204.5 283 48.4
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.4e-49 201.4 313 45.4
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.9e-49 201.1 396 40.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 2.7e-48 197.2 391 40.9
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 5.2e-47 193.0 267 47.9
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 5.7e-46 189.5 393 38.4
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 7.4e-46 189.1 341 41.1
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.8e-45 187.2 239 52.3
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 4.8e-45 186.4 466 33.9
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 8.2e-45 185.7 291 43.3
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.8e-44 184.5 437 35.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 3.1e-44 183.7 392 38.5
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.0e-44 182.6 385 38.7
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 7.0e-44 182.6 393 33.8
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.6e-43 180.6 411 35.3
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 7.7e-43 179.1 403 36.5
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.3e-42 178.3 391 38.4
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.3e-42 178.3 382 35.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.3e-42 178.3 440 31.8
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.2e-42 177.6 447 33.3
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.2e-42 177.6 385 37.4
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 3.8e-42 176.8 347 37.2
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 4.2e-41 173.3 350 36.0
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 7.2e-41 172.6 289 43.6
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.1e-40 169.5 450 34.4
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.1e-40 169.5 300 42.0
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.0e-39 168.7 433 35.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.8e-39 167.9 287 41.1
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.8e-39 167.9 301 36.9
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.0e-39 167.2 384 38.3
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 9.7e-38 162.2 438 32.9
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.3e-37 161.8 358 37.2
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.7e-37 161.4 330 38.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 4.8e-37 159.8 427 30.2
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 6.3e-37 159.5 449 33.0
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 8.2e-37 159.1 294 41.2
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.8e-36 157.9 294 39.5
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.2e-35 155.2 138 65.2
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 2.7e-35 154.1 459 31.8
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 4.5e-35 153.3 286 38.5
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.3e-34 151.8 454 32.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.3e-34 151.8 327 37.9
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 5.0e-34 149.8 454 31.9
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 8.5e-34 149.1 193 49.2
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 2.5e-33 147.5 405 33.8
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 9.4e-33 145.6 456 28.3
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 2.3e-31 141.0 211 44.5
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 6.8e-31 139.4 214 46.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.6e-30 137.5 436 28.9
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.6e-30 137.5 407 29.5
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 4.4e-30 136.7 424 31.1
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 9.8e-30 135.6 456 27.9
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.0e-28 129.4 310 34.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.0e-26 125.6 384 29.7
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 3.3e-25 120.6 336 33.3
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 4.7e-24 116.7 220 43.2
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.0e-23 115.5 224 36.6
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 6.8e-23 112.8 107 58.9
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.5e-22 111.7 275 35.6
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 5.4e-20 103.2 115 53.0
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 7.0e-20 102.8 283 30.7
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 2.7e-19 100.9 331 31.7
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 6.6e-18 96.3 328 29.6
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 6.8e-15 86.3 265 32.5
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 8.9e-15 85.9 155 43.2
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.8e-14 82.4 316 27.2
Lalb_Chr10g0096921 Lupinus albus HOM05D005648 ORTHO05D007357 9.8e-14 82.4 79 55.7
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.3e-13 82.0 484 26.0
TPR.G39951 Trifolium pratense HOM05D005648 ORTHO05D007357 6.4e-13 79.7 50 74.0
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 7.0e-12 76.3 91 50.5
arahy.Tifrunner.gnm1.ann1.IDZ4EF Arachis hypogaea HOM05D005648 ORTHO05D007357 1.3e-10 72.0 181 34.3
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-09 68.9 67 55.2
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 7.3e-09 66.2 99 39.4
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.7e-08 63.5 65 49.2
Medtr8g031840 Medicago truncatula HOM05D064426 ORTHO05D266851 1.1e-07 62.4 90 47.8
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.3e-07 61.2 68 52.9
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 3.1e-07 60.8 409 24.7
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 8.9e-07 59.3 107 44.9
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.6e-06 57.8 159 35.8
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.4e-06 57.0 85 48.2
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.5e-06 56.2 101 44.6


User provided reference genes

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