Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 3.1e-162 575.1 297 100.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 8.4e-107 391.0 248 83.1
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 7.1e-106 387.9 249 81.5
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.5e-103 379.4 248 79.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.8e-99 365.5 248 77.4
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 4.9e-91 338.6 246 75.2
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 1.4e-90 337.0 245 73.5
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.9e-90 336.7 245 73.5
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 3.2e-90 335.9 230 75.2
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 2.1e-89 333.2 243 74.9
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.8e-88 330.1 243 72.4
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.1e-87 327.4 249 73.5
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.5e-87 326.2 244 74.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 3.8e-83 312.4 247 69.2
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.0e-80 304.3 239 69.9
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.3e-79 298.9 247 66.8
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 7.4e-79 298.1 247 66.8
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.7e-78 295.8 247 66.0
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 6.2e-78 295.0 248 67.7
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 8.2e-78 294.7 245 64.5
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.1e-77 294.3 269 62.1
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.1e-77 294.3 249 65.5
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.4e-77 293.9 246 67.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 4.0e-77 292.4 245 65.7
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 4.0e-77 292.4 248 64.1
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 6.9e-77 291.6 244 65.2
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 6.9e-77 291.6 244 65.2
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.9e-77 291.6 247 65.2
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 2.0e-76 290.0 248 64.9
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 2.6e-76 289.7 247 65.6
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 3.4e-76 289.3 248 64.9
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 4.5e-76 288.9 244 64.8
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.7e-75 287.0 241 64.3
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.7e-75 287.0 244 66.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 8.4e-75 284.6 236 66.9
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.4e-74 283.9 250 64.4
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 3.2e-74 282.7 249 61.8
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 4.2e-74 282.3 246 63.4
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 9.3e-74 281.2 248 63.7
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 6.0e-73 278.5 229 66.4
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 7.9e-73 278.1 244 62.3
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.3e-72 276.6 249 61.0
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.0e-72 276.2 232 64.2
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 5.1e-72 275.4 245 63.3
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 5.1e-72 275.4 245 63.3
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 6.7e-72 275.0 230 67.4
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 6.7e-72 275.0 250 61.6
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 6.7e-72 275.0 247 63.2
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.5e-71 273.9 231 65.8
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.5e-71 273.9 229 63.8
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.5e-71 273.9 242 61.6
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 1.9e-71 273.5 247 62.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.9e-71 273.5 249 60.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 5.7e-71 271.9 229 65.1
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 7.4e-71 271.6 255 61.6
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.6e-70 270.4 248 61.3
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 6.3e-70 268.5 242 63.6
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 6.3e-70 268.5 254 62.2
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.8e-69 266.9 244 63.5
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.5e-68 263.8 250 61.2
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 1.5e-68 263.8 247 62.8
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.6e-68 263.1 260 60.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 5.9e-68 261.9 233 63.5
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 7.7e-68 261.5 238 62.6
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.0e-67 261.2 248 60.5
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 1.0e-67 261.2 247 59.5
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.0e-67 261.2 230 65.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.2e-67 260.0 251 61.0
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.9e-66 256.9 252 59.9
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 2.5e-66 256.5 250 60.4
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 2.5e-66 256.5 250 60.4
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 3.2e-66 256.1 229 62.4
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 5.5e-66 255.4 241 61.0
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 5.5e-66 255.4 240 61.2
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 7.2e-66 255.0 240 61.2
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 2.7e-65 253.1 238 59.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 6.1e-65 251.9 255 61.2
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 6.1e-65 251.9 264 57.6
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.0e-64 251.1 254 55.9
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.8e-64 250.4 178 70.2
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.8e-64 250.4 241 61.0
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.0e-64 249.6 253 55.3
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 7.4e-63 245.0 212 62.7
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 3.7e-62 242.7 251 53.8
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.1e-61 241.1 246 55.3
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-61 241.1 247 55.1
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.4e-61 240.7 256 53.5
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 2.4e-61 240.0 245 59.2
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 6.9e-61 238.4 254 53.1
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 9.1e-61 238.0 254 52.4
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.2e-60 237.7 244 54.9
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.0e-60 236.9 252 54.0
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.8e-59 232.6 246 54.5
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.8e-59 232.6 254 52.8
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.9e-58 230.3 240 55.8
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 7.2e-58 228.4 251 53.0
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 7.2e-58 228.4 251 53.0
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 9.4e-58 228.0 254 52.4
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.2e-57 227.6 248 54.0
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.3e-56 223.4 236 55.1
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.0e-55 220.3 236 55.5
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 2.6e-55 219.9 245 53.5
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 7.4e-55 218.4 228 51.3
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 6.3e-54 215.3 255 50.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 9.4e-50 201.4 248 49.2
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 3.6e-49 199.5 248 48.8
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 3.6e-49 199.5 248 48.8
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 6.1e-49 198.7 249 49.4
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.8e-48 197.2 251 47.8
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.8e-48 197.2 200 55.5
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 5.2e-48 195.7 250 48.0
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 8.8e-48 194.9 187 59.9
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.3e-43 181.0 182 58.8
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.7e-43 180.6 133 70.7
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.2e-31 141.4 121 57.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 9.8e-31 138.3 133 57.1
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.7e-27 127.5 247 40.1
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.6e-25 120.9 199 38.2
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 4.4e-23 112.8 194 38.7
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.7e-22 110.9 145 50.3
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.0e-21 105.5 75 70.7
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 1.0e-19 101.7 79 72.2
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 3.9e-19 99.8 126 50.0
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 8.9e-16 88.6 86 53.5
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 8.9e-16 88.6 147 42.9
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 9.8e-15 85.1 62 64.5
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 4.9e-14 82.8 145 39.3
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 6.4e-14 82.4 99 49.5
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-11 74.3 99 46.5


User provided reference genes

Program Settings