Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g023610 Medicago truncatula HOM05D001415 ORTHO05D001075 5.5e-26 120.2 59 100.0
TPR.G26464 Trifolium pratense HOM05D001415 ORTHO05D001075 3.0e-24 114.4 59 94.9
Ca_23470_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 2.0e-20 101.7 59 86.4
Lalb_Chr04g0254011 Lupinus albus HOM05D001415 ORTHO05D001075 7.2e-18 93.2 59 78.0
Gohir.D06G147900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.2e-17 92.4 59 71.2
Gorai.010G172400 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.2e-17 92.4 59 71.2
Glyma.07G047000 Glycine max HOM05D001415 ORTHO05D001075 1.6e-17 92.0 60 80.0
Gohir.D10G050300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.7e-17 91.3 59 72.9
Gorai.011G053800 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.6e-17 90.5 59 71.2
Lalb_Chr10g0101041 Lupinus albus HOM05D001415 ORTHO05D001075 4.6e-17 90.5 59 74.6
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.0e-16 89.4 59 71.2
Gohir.A06G142100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.7e-16 86.7 56 71.4
Thecc.06G132000 Theobroma cacao HOM05D001415 ORTHO05D001075 8.8e-16 86.3 59 67.8
Duzib192G0302 Durio zibethinus HOM05D001415 ORTHO05D001075 1.5e-15 85.5 59 67.8
Glyma.16G015200 Glycine max HOM05D001415 ORTHO05D001075 1.5e-15 85.5 62 75.8
COL.COLO4_30888 Corchorus olitorius HOM05D001415 ORTHO05D001075 3.3e-15 84.3 59 69.5
CiPaw.01G210100 Carya illinoinensis HOM05D001415 ORTHO05D001075 9.7e-15 82.8 48 79.2
Lalb_Chr18g0044821 Lupinus albus HOM05D001415 ORTHO05D001075 9.7e-15 82.8 59 67.8
Gorai.009G148600 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.3e-14 82.4 60 66.7
Gohir.A05G142400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.7e-14 82.0 60 66.7
Gohir.D05G144700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.7e-14 80.9 60 65.0
Lj1g0021078 Lotus japonicus HOM05D001415 ORTHO05D001075 4.8e-14 80.5 59 71.2
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 8.2e-14 79.7 61 68.9
CAN.G790.46 Capsicum annuum HOM05D001415 ORTHO05D001075 1.8e-13 78.6 55 65.5
Phvul.009G260600 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.4e-13 78.2 61 67.2
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 4.1e-13 77.4 58 62.1
RcHm_v2.0_Chr2g0148241 Rosa chinensis HOM05D001415 ORTHO05D001075 5.3e-13 77.0 43 79.1
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.9e-13 76.6 59 66.1
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 9.1e-13 76.3 46 73.9
PGSC0003DMG400009157 Solanum tuberosum HOM05D001415 ORTHO05D001075 1.2e-12 75.9 55 63.6
PGR119G2183 Punica granatum HOM05D001415 ORTHO05D001075 2.0e-12 75.1 54 64.8
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 2.6e-12 74.7 42 76.2
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 3.4e-12 74.3 60 60.0
Phvul.010G121900 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.9e-12 73.6 51 78.4
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.9e-12 73.6 44 70.5
Aqoxy7G04200 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 7.7e-12 73.2 43 76.7
MD09G1171200 Malus domestica HOM05D001415 ORTHO05D001075 7.7e-12 73.2 46 71.7
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 1.0e-11 72.8 42 76.2
CsaV3_7G033880 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.7e-11 72.0 50 70.0
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.7e-11 72.0 42 73.8
arahy.Tifrunner.gnm1.ann1.S2C0P1 Arachis hypogaea HOM05D001415 ORTHO05D001075 2.2e-11 71.6 52 71.2
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 2.2e-11 71.6 51 62.7
THA.LOC104822609 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 3.8e-11 70.9 59 61.0
MELO3C024301.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.0e-11 70.5 42 73.8
AT1G53708 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 6.5e-11 70.1 39 79.5
Carub.0001s4298 Capsella rubella HOM05D001415 ORTHO05D001075 6.5e-11 70.1 39 79.5
BraA08t32195Z Brassica rapa HOM05D001415 ORTHO05D001075 8.5e-11 69.7 40 77.5
Nn6g31497 Nelumbo nucifera HOM05D001415 ORTHO05D001075 8.5e-11 69.7 59 61.0
THA.LOC104810403 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 8.5e-11 69.7 41 73.2
Aa31LG8G1630 Aethionema arabicum HOM05D000146 ORTHO05D007947 1.4e-10 68.9 50 70.0
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 1.4e-10 68.9 55 61.8
AL1G62400 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.4e-10 68.9 40 77.5
BolC6t36025H Brassica oleracea HOM05D001415 ORTHO05D001075 1.4e-10 68.9 40 77.5
BolC3t21494H Brassica oleracea HOM05D001415 ORTHO05D001075 1.9e-10 68.6 40 77.5
Migut.D00904 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.2e-10 67.8 36 77.8
A08p01440 Brassica napus HOM05D001415 ORTHO05D001075 5.5e-10 67.0 40 75.0
BraA01t03976Z Brassica rapa HOM05D001415 ORTHO05D001075 5.5e-10 67.0 59 57.6
CARHR089420 Cardamine hirsuta HOM05D001415 ORTHO05D001075 5.5e-10 67.0 58 58.6
A01p39330 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 55.9
A03p38770 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 57.6
A05p35030 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 57.6
C05p52990 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 57.6
BolC3t16958H Brassica oleracea HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 57.6
BraA03t13025Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 57.6
BraA05t22317Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-09 65.9 59 57.6
AL3G26700 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.6e-09 65.5 40 72.5
AT3G14362 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.6e-09 65.5 40 72.5
BolC5t33977H Brassica oleracea HOM05D001415 ORTHO05D001075 1.6e-09 65.5 40 72.5
Carub.0003s1407 Capsella rubella HOM05D001415 ORTHO05D001075 1.6e-09 65.5 40 72.5
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 4.7e-09 63.9 42 66.7
BolC1t04969H Brassica oleracea HOM05D001415 ORTHO05D001075 1.0e-08 62.8 59 55.9
C01p50150 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-08 62.0 60 58.3
Cpa.g.sc157.2 Carica papaya HOM05D001415 ORTHO05D001075 2.3e-08 61.6 63 54.0
CSS0014027 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 6.7e-08 60.1 35 77.1
Dinv37809 Davidia involucrata HOM05D001415 ORTHO05D001075 1.5e-07 58.9 43 65.1
CsaV3_4G003150 Cucumis sativus L. HOM05D001415 ORTHO05D001075 5.7e-07 57.0 37 62.2
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 7.4e-07 56.6 43 58.1
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 7.4e-07 56.6 56 50.0
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 7.4e-07 56.6 44 56.8
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 9.7e-07 56.2 40 60.0
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 1.3e-06 55.8 44 56.8
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 1.3e-06 55.8 40 55.0
Medtr7g117490 Medicago truncatula HOM05D001415 ORTHO05D001075 1.7e-06 55.5 37 75.7
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 1.7e-06 55.5 47 53.2
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 1.7e-06 55.5 47 53.2
Carub.0002s1913 Capsella rubella HOM05D018069 ORTHO05D019709 2.2e-06 55.1 46 58.7
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 2.2e-06 55.1 41 56.1
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.2e-06 55.1 34 67.6
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.2e-06 55.1 34 67.6
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.2e-06 55.1 34 67.6
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 2.8e-06 54.7 42 54.8
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.8e-06 54.7 41 56.1
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 2.8e-06 54.7 39 61.5
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 2.8e-06 54.7 34 70.6
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 2.8e-06 54.7 34 70.6
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 2.8e-06 54.7 34 70.6
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 2.8e-06 54.7 40 55.0
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 3.7e-06 54.3 43 55.8
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 3.7e-06 54.3 37 62.2
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 4.8e-06 53.9 43 58.1
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 4.8e-06 53.9 38 57.9
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 4.8e-06 53.9 38 57.9
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 4.8e-06 53.9 40 60.0
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 4.8e-06 53.9 37 62.2
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 4.8e-06 53.9 43 55.8
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-06 53.9 31 71.0
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-06 53.9 38 57.9
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-06 53.9 31 71.0
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 4.8e-06 53.9 33 72.7
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 4.8e-06 53.9 41 53.7
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 6.3e-06 53.5 41 53.7
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 63.9
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.3e-06 53.5 34 67.6
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.3e-06 53.5 34 67.6
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 61.1
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 61.1
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 61.1
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 6.3e-06 53.5 34 67.6
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 63.9
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 61.1
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 6.3e-06 53.5 36 61.1
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 8.2e-06 53.1 35 60.0
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 8.2e-06 53.1 33 66.7
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 8.2e-06 53.1 32 71.9
Os03g0272900 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 8.2e-06 53.1 31 71.0
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 8.2e-06 53.1 40 62.5
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 8.2e-06 53.1 41 56.1


User provided reference genes

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