Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 0.0e+00 1572.0 831 100.0
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 0.0e+00 1341.3 792 85.9
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 0.0e+00 1300.8 794 82.9
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 0.0e+00 1210.3 795 77.5
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 0.0e+00 1196.8 794 77.0
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 0.0e+00 1180.6 795 75.1
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 0.0e+00 1177.5 794 75.9
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 0.0e+00 1170.2 794 74.9
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 0.0e+00 1112.8 786 73.3
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 0.0e+00 1084.3 792 69.8
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.8e-276 956.1 801 62.0
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 4.6e-272 941.4 795 61.6
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.3e-271 939.1 803 60.3
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 2.2e-269 932.6 804 59.7
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 4.8e-269 931.4 804 61.7
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 1.4e-268 929.9 798 61.7
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 5.3e-268 927.9 804 60.2
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.2e-265 918.7 813 59.5
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 3.6e-264 915.2 796 60.6
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.9e-263 911.8 825 59.3
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 8.8e-263 910.6 799 60.5
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 3.7e-261 905.2 799 58.7
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 4.8e-261 904.8 834 58.4
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 8.2e-261 904.0 800 60.8
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 8.2e-261 904.0 793 60.5
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.4e-260 902.5 802 59.9
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 5.9e-259 897.9 793 58.5
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.5e-257 893.3 796 59.3
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 2.5e-257 892.5 814 58.7
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 5.5e-257 891.3 785 58.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 9.4e-257 890.6 794 59.6
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 2.1e-256 889.4 788 59.3
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 8.0e-256 887.5 792 58.8
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 5.2e-255 884.8 800 57.8
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 2.0e-254 882.9 806 56.2
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.3e-253 880.2 792 59.0
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 1.7e-253 879.8 804 57.1
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 2.2e-253 879.4 762 59.4
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 8.2e-253 877.5 801 58.9
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.1e-252 877.1 784 58.8
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.0e-251 872.8 822 56.7
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 5.9e-251 871.3 794 58.7
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 2.9e-250 869.0 839 55.8
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.7e-248 862.4 796 58.0
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.6e-246 855.9 814 55.8
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 9.8e-246 854.0 805 56.3
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 4.8e-245 851.7 812 56.8
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.4e-244 850.1 803 55.5
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 3.1e-244 849.0 805 55.8
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.7e-243 845.9 817 56.1
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.5e-243 845.1 790 56.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 2.9e-242 842.4 798 56.9
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.9e-242 842.4 798 56.8
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 4.7e-240 835.1 803 55.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 6.1e-240 834.7 798 56.5
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 6.1e-240 834.7 798 55.5
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.8e-239 833.2 799 55.3
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.3e-237 827.0 795 54.7
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 8.3e-237 824.3 816 55.0
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 3.1e-236 822.4 539 79.0
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 4.1e-236 822.0 660 62.1
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 7.7e-235 817.8 798 53.3
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 6.6e-234 814.7 797 54.8
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 6.1e-232 808.1 800 52.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 6.1e-232 808.1 798 53.0
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 1.0e-231 807.4 798 53.1
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 3.0e-231 805.8 764 54.8
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 7.5e-230 801.2 801 53.2
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 9.8e-230 800.8 788 55.7
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 2.2e-229 799.7 799 52.4
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 3.7e-229 798.9 800 52.9
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.8e-228 796.6 808 52.1
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.8e-228 796.6 799 52.4
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 2.4e-228 796.2 811 54.6
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 3.2e-228 795.8 794 52.5
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 5.4e-228 795.0 809 54.5
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.0e-226 790.8 809 53.4
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.3e-225 785.8 795 53.2
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-224 783.9 800 52.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 2.1e-224 783.1 796 52.4
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.3e-221 773.9 799 50.8
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.7e-221 773.5 813 52.4
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 6.4e-221 771.5 842 50.4
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.4e-220 770.4 801 51.6
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 1.2e-219 767.3 804 52.4
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 3.9e-218 762.3 796 49.6
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 3.9e-210 735.7 810 52.0
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 8.6e-210 734.6 816 49.4
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 3.1e-207 726.1 811 47.7
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 5.8e-206 721.8 717 53.7
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 6.0e-203 711.8 799 51.4
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 5.2e-199 698.7 798 49.7
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 9.9e-198 694.5 807 49.3
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 2.1e-195 686.8 815 47.0
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.0e-194 684.5 558 60.6
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.5e-193 680.6 484 68.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 8.1e-192 674.9 810 46.2
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.4e-189 665.2 742 47.3
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 9.3e-180 634.8 611 57.6
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 9.7e-169 598.2 677 49.8
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.5e-161 573.5 829 41.5
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.3e-157 561.2 810 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 1.7e-157 560.8 813 40.1
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.1e-153 548.1 582 50.9
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 3.3e-153 546.6 716 42.0
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.5e-140 504.6 393 59.8
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.8e-138 497.7 773 38.4
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 4.5e-126 456.4 389 57.3
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.7e-118 430.6 449 50.3
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 3.3e-116 423.7 477 51.2
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 3.5e-102 377.1 423 46.8
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 9.5e-100 369.0 391 54.0
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.2e-89 335.5 425 48.9
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.4e-87 328.6 484 45.0
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.4e-87 327.8 417 48.7
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 4.3e-84 317.0 533 35.1
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.3e-64 252.3 230 53.5
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.1e-62 245.0 194 66.0
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 4.1e-50 204.1 360 41.4
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 3.2e-47 194.5 196 55.1
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.1e-34 152.9 483 26.5
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 1.2e-30 139.4 199 46.2
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.6e-25 122.5 195 37.4
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.8e-24 117.9 80 66.2
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.0e-21 109.8 209 34.4
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 1.2e-20 106.3 157 47.8
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 2.4e-18 98.6 93 52.7
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 5.3e-18 97.4 91 47.3
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 9.4e-15 86.7 375 28.0
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.3e-13 82.0 128 39.8
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 3.7e-11 74.7 117 44.4
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 3.7e-11 74.7 117 44.4
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 4.8e-11 74.3 51 68.6
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 4.8e-11 74.3 51 68.6
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 4.8e-11 74.3 67 52.2
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 7.7e-09 67.0 181 35.9
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 2.3e-08 65.5 344 22.7
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 2.9e-08 65.1 341 22.9
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 3.8e-08 64.7 42 78.6
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.8e-08 64.7 42 78.6
Manes.13G040100 Manihot esculenta HOM05D002279 ORTHO05D002644 8.6e-08 63.5 361 21.1
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 8.6e-08 63.5 511 20.7
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 1.1e-07 63.2 46 63.0
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 1.1e-07 63.2 46 63.0
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 1.9e-07 62.4 45 66.7
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 1.9e-07 62.4 45 66.7
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 1.9e-07 62.4 337 22.6
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 3.3e-07 61.6 41 70.7
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 3.3e-07 61.6 425 22.4
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 2.1e-06 58.9 342 21.9
BcaC06g32892 Brassica carinata HOM05D008164 ORTHO05D010222 2.8e-06 58.5 38 71.1
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 2.8e-06 58.5 130 37.7
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.8e-06 58.5 440 23.0
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.8e-06 58.5 338 22.2
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 8.0e-06 57.0 325 24.0
Migut.C00994 Erythranthe guttata HOM05D000142 ORTHO05D000124 8.0e-06 57.0 88 30.7


User provided reference genes

Program Settings