Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g011565 Medicago truncatula HOM05D004262 ORTHO05D004886 3.0e-193 678.3 345 100.0
Medtr8g011130 Medicago truncatula HOM05D004262 ORTHO05D004886 1.6e-186 656.0 345 97.4
TPR.G12210 Trifolium pratense HOM05D004262 ORTHO05D004886 1.2e-93 347.4 430 51.2
Medtr7g077430 Medicago truncatula HOM05D004262 ORTHO05D004886 3.7e-90 335.9 317 58.4
Medtr8g033130 Medicago truncatula HOM05D004262 ORTHO05D004886 3.4e-75 286.2 208 75.0
Psat5g062600 Pisum sativum HOM05D004262 ORTHO05D004886 1.6e-32 144.4 319 38.6
Ca_16911_v3 Cicer arietinum L. HOM05D004262 ORTHO05D004886 2.1e-32 144.1 232 42.2
Lj1g0022256 Lotus japonicus HOM05D004262 ORTHO05D004886 6.0e-32 142.5 260 40.4
Medtr3g095410 Medicago truncatula HOM05D004262 ORTHO05D004886 6.0e-32 142.5 294 38.4
Medtr8g011120 Medicago truncatula HOM05D004262 ORTHO05D004886 1.9e-30 137.5 239 39.7
Medtr8g011570 Medicago truncatula HOM05D004262 ORTHO05D004886 3.3e-30 136.7 231 39.8
Medtr4g098990 Medicago truncatula HOM05D004262 ORTHO05D004886 8.1e-29 132.1 242 39.3
TPR.G18728 Trifolium pratense HOM05D004262 ORTHO05D004886 8.1e-29 132.1 274 37.6
arahy.Tifrunner.gnm1.ann1.3RI1TB Arachis hypogaea HOM05D004262 ORTHO05D004886 9.0e-28 128.6 235 38.7
arahy.Tifrunner.gnm1.ann1.H08UBS Arachis hypogaea HOM05D004262 ORTHO05D004886 3.8e-26 123.2 235 38.7
Sed0020078 Sechium edule HOM05D004262 ORTHO05D004886 3.8e-26 123.2 337 32.3
GSVIVG01026616001 Vitis vinifera HOM05D004262 ORTHO05D004886 1.2e-24 118.2 260 34.2
TWI79G1577 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 7.9e-24 115.5 253 37.2
COL.COLO4_23999 Corchorus olitorius HOM05D000145 ORTHO05D004886 8.7e-23 112.1 430 26.0
Glyma.04G205700 Glycine max HOM05D004262 ORTHO05D004886 1.9e-22 110.9 362 28.5
Glyma.04G216500 Glycine max HOM05D004262 ORTHO05D004886 2.5e-22 110.5 239 34.7
Thecc.01G119500 Theobroma cacao HOM05D004262 ORTHO05D004886 3.3e-22 110.2 310 30.0
Nitab4.5_0004021g0030 Nicotiana tabacum HOM05D004262 ORTHO05D004886 5.6e-22 109.4 444 26.6
Peaxi162Scf00025g02620 Petunia axillaris HOM05D004262 ORTHO05D004886 7.4e-22 109.0 236 32.6
Rhsim10G0142400 Rhododendron simsii HOM05D004262 ORTHO05D004886 9.6e-22 108.6 223 35.4
Cpa.g.sc72.29 Carica papaya HOM05D004262 ORTHO05D004886 1.3e-21 108.2 217 36.4
Sed0013193 Sechium edule HOM05D004262 ORTHO05D004886 1.6e-21 107.8 242 34.7
MD01G1017000 Malus domestica HOM05D004262 ORTHO05D004886 2.1e-21 107.5 238 34.9
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 4.8e-21 106.3 215 34.0
QL06p030897 Quercus lobata HOM05D004262 ORTHO05D004886 4.8e-21 106.3 225 34.7
vmacro12820 Vaccinium macrocarpon HOM05D004262 ORTHO05D004886 6.2e-21 105.9 250 33.2
CSS0008059 Camellia sinensis var. sinensis HOM05D004262 ORTHO05D004886 1.1e-20 105.1 228 33.8
Dinv12126 Davidia involucrata HOM05D004262 ORTHO05D004886 1.1e-20 105.1 231 35.1
Lj2A589G33 Lonicera japonica HOM05D004262 ORTHO05D004886 2.4e-20 104.0 250 32.8
TWI31G0151 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 2.4e-20 104.0 235 34.9
CiPaw.04G086800 Carya illinoinensis HOM05D004262 ORTHO05D004886 3.1e-20 103.6 235 34.9
Cfa002810 Carpinus fangiana HOM05D004262 ORTHO05D004886 4.0e-20 103.2 304 29.3
C02p63520 Brassica napus HOM05D004262 ORTHO05D004886 5.3e-20 102.8 421 26.6
Prupe.7G207600 Prunus persica HOM05D004262 ORTHO05D004886 5.3e-20 102.8 230 35.7
BraA02t09267Z Brassica rapa HOM05D004262 ORTHO05D004886 6.9e-20 102.4 416 26.2
Lalb_Chr08g0238681 Lupinus albus HOM05D004262 ORTHO05D004886 9.0e-20 102.1 229 34.9
Sc16g0004000 Simmondsia chinensis HOM05D004262 ORTHO05D004886 9.0e-20 102.1 233 30.9
Actinidia09812 Actinidia chinensis HOM05D004262 ORTHO05D004886 2.0e-19 100.9 243 35.0
Dinv15095 Davidia involucrata HOM05D004262 ORTHO05D004886 2.6e-19 100.5 241 32.4
Duzib147G0824 Durio zibethinus HOM05D004262 ORTHO05D004886 2.6e-19 100.5 259 31.7
Nitab4.5_0001582g0040 Nicotiana tabacum HOM05D004262 ORTHO05D004886 3.4e-19 100.1 225 33.8
Migut.H02473 Erythranthe guttata HOM05D004262 ORTHO05D004886 4.5e-19 99.8 241 33.6
CiPaw.04G087100 Carya illinoinensis HOM05D004262 ORTHO05D004886 5.8e-19 99.4 217 35.0
TAR625G1293 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.0e-18 98.6 231 33.3
Gohir.D11G226360 Gossypium hirsutum HOM05D004262 ORTHO05D004886 1.3e-18 98.2 244 34.0
Gorai.002G150600 Gossypium raimondii HOM05D004262 ORTHO05D004886 1.7e-18 97.8 244 33.6
Phvul.009G147000 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 1.7e-18 97.8 227 31.7
THA.LOC104818467 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 2.2e-18 97.4 247 31.6
A02p43420 Brassica napus HOM05D004262 ORTHO05D004886 2.9e-18 97.1 425 25.6
CAN.G516.2 Capsicum annuum HOM05D004262 ORTHO05D004886 3.8e-18 96.7 237 31.6
MSTRG.23288 Avicennia marina HOM05D004262 ORTHO05D004886 4.9e-18 96.3 225 32.9
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 6.5e-18 95.9 251 33.1
TAR250G0005 Trochodendron aralioides HOM05D004262 ORTHO05D004886 6.5e-18 95.9 243 33.7
RcHm_v2.0_Chr2g0119261 Rosa chinensis HOM05D004262 ORTHO05D004886 8.4e-18 95.5 277 29.6
Eucgr.I00260 Eucalyptus grandis HOM05D004262 ORTHO05D004886 1.1e-17 95.1 256 30.5
Manes.13G082100 Manihot esculenta HOM05D004262 ORTHO05D004886 1.1e-17 95.1 238 31.9
TAR381G1254 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.4e-17 94.7 243 33.7
ECA234G3594 Erigeron canadensis HOM05D004262 ORTHO05D004886 1.9e-17 94.4 213 34.7
HanXRQChr10g0296711 Helianthus annuus HOM05D004262 ORTHO05D004886 1.9e-17 94.4 337 27.6
VMungo1309G1096 Vigna mungo HOM05D004262 ORTHO05D004886 1.9e-17 94.4 232 33.2
DCAR_014352 Daucus carota HOM05D004262 ORTHO05D004886 2.5e-17 94.0 241 32.0
Phvul.003G208800 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 2.5e-17 94.0 227 32.6
Aa31LG1G17200 Aethionema arabicum HOM05D004262 ORTHO05D004886 3.2e-17 93.6 451 24.2
ClCG02G000740 Citrullus lanatus HOM05D004262 ORTHO05D004886 3.2e-17 93.6 225 32.9
Lsat_1_v5_gn_5_101740 Lactuca sativa HOM05D004262 ORTHO05D004886 3.2e-17 93.6 223 32.7
SGA_v2.0_scaffold2G01256 Striga asiatica HOM05D004262 ORTHO05D004886 3.2e-17 93.6 236 33.9
Ciclev10024792m.g Citrus clementina HOM05D004262 ORTHO05D004886 4.2e-17 93.2 216 33.8
MELO3C023273.2 Cucumis melo HOM05D004262 ORTHO05D004886 5.5e-17 92.8 276 31.5
Duzib187G1764 Durio zibethinus HOM05D004262 ORTHO05D004886 5.5e-17 92.8 270 31.5
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 7.1e-17 92.4 216 36.1
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 7.1e-17 92.4 281 31.0
FAN26G0764 Fragaria x ananassa HOM05D004262 ORTHO05D004886 9.3e-17 92.0 278 28.8
FvH4_1g23660 Fragaria vesca HOM05D004262 ORTHO05D004886 1.2e-16 91.7 278 28.4
FAN19G0674 Fragaria x ananassa HOM05D004262 ORTHO05D004886 1.2e-16 91.7 249 30.9
Sabra16G0193600 Salix brachista HOM05D004262 ORTHO05D004886 1.2e-16 91.7 271 29.5
Glyma.04G218102 Glycine max HOM05D004262 ORTHO05D004886 2.1e-16 90.9 110 42.7
FAN28G2830 Fragaria x ananassa HOM05D004262 ORTHO05D004886 2.7e-16 90.5 253 30.4
Glyma.05G045500 Glycine max HOM05D004262 ORTHO05D004886 3.5e-16 90.1 74 58.1
FAN23G1672 Fragaria x ananassa HOM05D004262 ORTHO05D004886 4.6e-16 89.7 278 28.4
Cc07_g17550 Coffea canephora HOM05D004262 ORTHO05D004886 7.9e-16 89.0 234 32.1
Lj4C857T4 Lonicera japonica HOM05D004262 ORTHO05D004886 7.9e-16 89.0 178 36.0
Glyma.17G127700 Glycine max HOM05D004262 ORTHO05D004886 1.0e-15 88.6 74 56.8
HPP92_002646 Vanilla planifolia HOM05D004262 ORTHO05D004886 1.8e-15 87.8 214 33.6
Thhalv10012635m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 2.3e-15 87.4 240 32.5
Potri.019G004000 Populus trichocarpa HOM05D004262 ORTHO05D004886 2.3e-15 87.4 231 32.0
EL10Ac6g15245 Beta vulgaris HOM05D004262 ORTHO05D004886 3.0e-15 87.0 235 32.8
PGR119G1219 Punica granatum HOM05D004262 ORTHO05D004886 3.0e-15 87.0 230 32.6
CARHR278700 Cardamine hirsuta HOM05D004262 ORTHO05D004886 3.9e-15 86.7 421 24.5
BcaB07g29753 Brassica carinata HOM05D004262 ORTHO05D004886 5.1e-15 86.3 438 25.1
CsaV3_2G018000 Cucumis sativus L. HOM05D004262 ORTHO05D004886 5.1e-15 86.3 239 30.5
Hund19612 Selenicereus undatus HOM05D004262 ORTHO05D004886 1.9e-14 84.3 228 29.4
Aa31LG3G17280 Aethionema arabicum HOM05D004262 ORTHO05D004886 2.5e-14 84.0 349 26.9
AT5G09840 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 2.5e-14 84.0 254 29.5
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 2.5e-14 84.0 248 30.6
SalBow8G4827 Salvia bowleyana HOM05D004262 ORTHO05D004886 5.7e-14 82.8 237 30.4
VMungo0022G0001 Vigna mungo HOM05D004262 ORTHO05D004886 5.7e-14 82.8 74 54.1
Aqoxy5G02078 Aquilegia oxysepala HOM05D004262 ORTHO05D004886 7.4e-14 82.4 223 32.7
CANSAT01G2046 Cannabis sativa HOM05D004262 ORTHO05D004886 1.1e-12 78.6 118 43.2
Hund03495 Selenicereus undatus HOM05D004262 ORTHO05D004886 1.1e-12 78.6 236 28.4
PSO675G0841 Papaver somniferum HOM05D004262 ORTHO05D004886 1.4e-12 78.2 293 26.3
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 1.8e-12 77.8 106 36.8
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 1.8e-12 77.8 106 36.8
TPR.G12261 Trifolium pratense HOM05D004262 ORTHO05D004886 5.3e-12 76.3 97 46.4
PSO675G3917 Papaver somniferum HOM05D004262 ORTHO05D004886 1.2e-11 75.1 443 23.5
Thhalv10005625m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 2.0e-11 74.3 249 28.5
Os12g0162900 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 4.5e-11 73.2 224 30.4
AL8G42160 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 1.7e-10 71.2 268 27.2
AL6G20250 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 2.2e-10 70.9 84 42.9
A10p27620 Brassica napus HOM05D004262 ORTHO05D004886 2.2e-10 70.9 76 44.7
BraA10t44814Z Brassica rapa HOM05D004262 ORTHO05D004886 2.2e-10 70.9 76 44.7
DCAR_001416 Daucus carota HOM05D004262 ORTHO05D004886 2.2e-10 70.9 189 31.7
C09p67680 Brassica napus HOM05D004262 ORTHO05D004886 5.0e-10 69.7 76 44.7
BolC9t59530H Brassica oleracea HOM05D004262 ORTHO05D004886 5.0e-10 69.7 76 44.7
CARHR203550 Cardamine hirsuta HOM05D004262 ORTHO05D004886 8.5e-10 68.9 77 44.2
Medtr1g008910 Medicago truncatula HOM05D004262 ORTHO05D004886 1.1e-09 68.6 50 70.0
SHI11519 Sapria himalayana HOM05D004262 ORTHO05D004886 1.1e-09 68.6 171 29.2
Oeu002630.1 Olea europaea HOM05D004262 ORTHO05D004886 1.4e-09 68.2 93 38.7
ATR0820G094 Amborella trichopoda HOM05D004262 ORTHO05D004886 2.5e-09 67.4 174 32.8
Sp6g33570 Schrenkiella parvula HOM05D004262 ORTHO05D004886 2.5e-09 67.4 84 40.5
THA.LOC104799402 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 2.5e-09 67.4 78 38.5
BcaB08g37177 Brassica carinata HOM05D004262 ORTHO05D004886 3.2e-09 67.0 76 43.4
AUR62017940 Chenopodium quinoa HOM05D004262 ORTHO05D004886 3.2e-09 67.0 85 36.5
Gohir.D11G259666 Gossypium hirsutum HOM05D004262 ORTHO05D004886 3.2e-09 67.0 74 40.5
Gohir.A11G223950 Gossypium hirsutum HOM05D004262 ORTHO05D004886 5.5e-09 66.2 80 40.0
Sp2g27780 Schrenkiella parvula HOM05D004262 ORTHO05D004886 7.2e-09 65.9 78 43.6
BcaC03g18272 Brassica carinata HOM05D004262 ORTHO05D004886 1.6e-08 64.7 74 47.3
BolC2t12417H Brassica oleracea HOM05D004262 ORTHO05D004886 1.6e-08 64.7 74 47.3
COL.COLO4_22393 Corchorus olitorius HOM05D000258 ORTHO05D000153 1.6e-08 64.7 93 34.4
Solyc11g005440.2 Solanum lycopersicum HOM05D004262 ORTHO05D004886 1.6e-08 64.7 73 47.9
Sopen11g001450 Solanum pennellii HOM05D004262 ORTHO05D004886 1.6e-08 64.7 73 47.9
PGSC0003DMG400003967 Solanum tuberosum HOM05D004262 ORTHO05D004886 1.6e-08 64.7 73 47.9
Gorai.007G277700 Gossypium raimondii HOM05D004262 ORTHO05D004886 2.7e-08 63.9 74 37.8
AT5G64710 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 3.6e-08 63.5 77 40.3
Carub.0008s2552 Capsella rubella HOM05D004262 ORTHO05D004886 3.6e-08 63.5 77 41.6
Ah.02g122290 Amaranthus hybridus HOM05D004262 ORTHO05D004886 3.9e-07 60.1 80 37.5
CDE06G2757 Ceratophyllum demersum HOM05D004262 ORTHO05D004886 2.5e-06 57.4 72 37.5
Lj2A577G25 Lonicera japonica HOM05D004262 ORTHO05D004886 2.5e-06 57.4 239 28.0
Os11g0167300 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 4.3e-06 56.6 74 40.5
AUR62003631 Chenopodium quinoa HOM05D004262 ORTHO05D004886 5.7e-06 56.2 97 32.0


User provided reference genes

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