Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g011130 Medicago truncatula HOM05D004262 ORTHO05D004886 5.2e-193 677.6 345 100.0
Medtr8g011565 Medicago truncatula HOM05D004262 ORTHO05D004886 4.7e-186 654.4 345 97.4
TPR.G12210 Trifolium pratense HOM05D004262 ORTHO05D004886 1.7e-95 353.6 430 51.4
Medtr7g077430 Medicago truncatula HOM05D004262 ORTHO05D004886 1.3e-90 337.4 317 58.7
Medtr8g033130 Medicago truncatula HOM05D004262 ORTHO05D004886 7.5e-75 285.0 204 75.5
Ca_16911_v3 Cicer arietinum L. HOM05D004262 ORTHO05D004886 1.2e-32 144.8 228 42.5
Lj1g0022256 Lotus japonicus HOM05D004262 ORTHO05D004886 3.5e-32 143.3 256 41.0
Psat5g062600 Pisum sativum HOM05D004262 ORTHO05D004886 3.5e-32 143.3 315 38.4
Medtr3g095410 Medicago truncatula HOM05D004262 ORTHO05D004886 1.0e-31 141.7 290 39.0
Medtr8g011120 Medicago truncatula HOM05D004262 ORTHO05D004886 2.3e-31 140.6 229 41.5
Medtr8g011570 Medicago truncatula HOM05D004262 ORTHO05D004886 5.1e-31 139.4 227 40.5
Medtr4g098990 Medicago truncatula HOM05D004262 ORTHO05D004886 3.7e-29 133.3 238 39.9
TPR.G18728 Trifolium pratense HOM05D004262 ORTHO05D004886 1.8e-28 131.0 270 35.9
arahy.Tifrunner.gnm1.ann1.3RI1TB Arachis hypogaea HOM05D004262 ORTHO05D004886 4.5e-27 126.3 232 39.2
Sed0020078 Sechium edule HOM05D004262 ORTHO05D004886 4.9e-26 122.9 329 33.4
arahy.Tifrunner.gnm1.ann1.H08UBS Arachis hypogaea HOM05D004262 ORTHO05D004886 1.9e-25 120.9 232 39.2
GSVIVG01026616001 Vitis vinifera HOM05D004262 ORTHO05D004886 1.9e-25 120.9 256 35.2
TWI79G1577 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 1.0e-23 115.2 245 37.1
COL.COLO4_23999 Corchorus olitorius HOM05D000145 ORTHO05D004886 3.0e-23 113.6 428 26.9
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 3.0e-23 113.6 261 33.3
Glyma.04G205700 Glycine max HOM05D004262 ORTHO05D004886 5.1e-23 112.8 368 28.5
Glyma.04G216500 Glycine max HOM05D004262 ORTHO05D004886 8.7e-23 112.1 235 34.9
Nitab4.5_0004021g0030 Nicotiana tabacum HOM05D004262 ORTHO05D004886 1.1e-22 111.7 440 26.8
Thecc.01G119500 Theobroma cacao HOM05D004262 ORTHO05D004886 1.1e-22 111.7 358 28.5
Peaxi162Scf00025g02620 Petunia axillaris HOM05D004262 ORTHO05D004886 1.9e-22 110.9 232 33.2
Cpa.g.sc72.29 Carica papaya HOM05D004262 ORTHO05D004886 4.3e-22 109.8 213 37.1
Rhsim10G0142400 Rhododendron simsii HOM05D004262 ORTHO05D004886 7.4e-22 109.0 221 36.2
MD01G1017000 Malus domestica HOM05D004262 ORTHO05D004886 2.1e-21 107.5 233 35.2
BcaC03g18272 Brassica carinata HOM05D004262 ORTHO05D004886 2.8e-21 107.1 411 27.5
BolC2t12417H Brassica oleracea HOM05D004262 ORTHO05D004886 2.8e-21 107.1 411 27.5
QL06p030897 Quercus lobata HOM05D004262 ORTHO05D004886 3.7e-21 106.7 221 35.3
Dinv12126 Davidia involucrata HOM05D004262 ORTHO05D004886 4.8e-21 106.3 221 35.3
Sed0013193 Sechium edule HOM05D004262 ORTHO05D004886 4.8e-21 106.3 237 35.0
vmacro12820 Vaccinium macrocarpon HOM05D004262 ORTHO05D004886 6.2e-21 105.9 248 33.9
CSS0008059 Camellia sinensis var. sinensis HOM05D004262 ORTHO05D004886 1.1e-20 105.1 221 34.4
CiPaw.04G086800 Carya illinoinensis HOM05D004262 ORTHO05D004886 1.1e-20 105.1 231 35.5
TWI31G0151 Tripterygium wilfordii HOM05D004262 ORTHO05D004886 1.4e-20 104.8 231 35.1
Lj2A589G33 Lonicera japonica HOM05D004262 ORTHO05D004886 1.8e-20 104.4 242 32.6
Prupe.7G207600 Prunus persica HOM05D004262 ORTHO05D004886 2.4e-20 104.0 226 36.3
Sc16g0004000 Simmondsia chinensis HOM05D004262 ORTHO05D004886 3.1e-20 103.6 231 31.6
C02p63520 Brassica napus HOM05D004262 ORTHO05D004886 5.3e-20 102.8 418 27.3
Lalb_Chr08g0238681 Lupinus albus HOM05D004262 ORTHO05D004886 5.3e-20 102.8 225 35.1
BraA02t09267Z Brassica rapa HOM05D004262 ORTHO05D004886 6.9e-20 102.4 413 26.9
Actinidia09812 Actinidia chinensis HOM05D004262 ORTHO05D004886 9.0e-20 102.1 237 34.6
Cfa002810 Carpinus fangiana HOM05D004262 ORTHO05D004886 9.0e-20 102.1 300 29.3
Nitab4.5_0001582g0040 Nicotiana tabacum HOM05D004262 ORTHO05D004886 9.0e-20 102.1 221 34.4
CiPaw.04G087100 Carya illinoinensis HOM05D004262 ORTHO05D004886 2.0e-19 100.9 213 35.7
Dinv15095 Davidia involucrata HOM05D004262 ORTHO05D004886 2.0e-19 100.9 237 32.9
Migut.H02473 Erythranthe guttata HOM05D004262 ORTHO05D004886 3.4e-19 100.1 237 33.8
Phvul.009G147000 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 4.5e-19 99.8 225 33.3
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 5.8e-19 99.4 247 33.6
TAR625G1293 Trochodendron aralioides HOM05D004262 ORTHO05D004886 5.8e-19 99.4 227 33.9
Eucgr.I00260 Eucalyptus grandis HOM05D004262 ORTHO05D004886 7.6e-19 99.0 252 31.7
Gohir.D11G226360 Gossypium hirsutum HOM05D004262 ORTHO05D004886 7.6e-19 99.0 240 34.2
Gorai.002G150600 Gossypium raimondii HOM05D004262 ORTHO05D004886 1.0e-18 98.6 240 33.8
Duzib147G0824 Durio zibethinus HOM05D004262 ORTHO05D004886 1.7e-18 97.8 253 31.2
A02p43420 Brassica napus HOM05D004262 ORTHO05D004886 2.9e-18 97.1 422 26.3
CAN.G516.2 Capsicum annuum HOM05D004262 ORTHO05D004886 3.8e-18 96.7 225 32.0
MSTRG.23288 Avicennia marina HOM05D004262 ORTHO05D004886 4.9e-18 96.3 223 31.8
TAR250G0005 Trochodendron aralioides HOM05D004262 ORTHO05D004886 4.9e-18 96.3 233 33.9
VMungo1309G1096 Vigna mungo HOM05D004262 ORTHO05D004886 4.9e-18 96.3 228 32.9
Manes.13G082100 Manihot esculenta HOM05D004262 ORTHO05D004886 6.5e-18 95.9 234 32.5
FAN19G0674 Fragaria x ananassa HOM05D004262 ORTHO05D004886 8.4e-18 95.5 245 31.8
RcHm_v2.0_Chr2g0119261 Rosa chinensis HOM05D004262 ORTHO05D004886 8.4e-18 95.5 273 30.4
Lsat_1_v5_gn_5_101740 Lactuca sativa HOM05D004262 ORTHO05D004886 1.1e-17 95.1 219 33.3
TAR381G1254 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.1e-17 95.1 233 33.9
ECA234G3594 Erigeron canadensis HOM05D004262 ORTHO05D004886 1.4e-17 94.7 211 34.6
FvH4_1g23660 Fragaria vesca HOM05D004262 ORTHO05D004886 1.4e-17 94.7 270 29.3
Gohir.A11G223950 Gossypium hirsutum HOM05D004262 ORTHO05D004886 1.4e-17 94.7 240 32.5
Oeu002630.1 Olea europaea HOM05D004262 ORTHO05D004886 1.4e-17 94.7 228 33.8
THA.LOC104818467 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 1.4e-17 94.7 245 32.2
ClCG02G000740 Citrullus lanatus HOM05D004262 ORTHO05D004886 1.9e-17 94.4 221 33.5
DCAR_014352 Daucus carota HOM05D004262 ORTHO05D004886 1.9e-17 94.4 237 32.1
Aa31LG1G17200 Aethionema arabicum HOM05D004262 ORTHO05D004886 2.5e-17 94.0 447 23.7
Oeu064303.1 Olea europaea HOM05D004262 ORTHO05D004886 2.5e-17 94.0 228 32.0
SGA_v2.0_scaffold2G01256 Striga asiatica HOM05D004262 ORTHO05D004886 2.5e-17 94.0 232 34.5
HanXRQChr10g0296711 Helianthus annuus HOM05D004262 ORTHO05D004886 3.2e-17 93.6 335 27.5
Ciclev10024792m.g Citrus clementina HOM05D004262 ORTHO05D004886 4.2e-17 93.2 212 34.4
COL.COLO4_22393 Corchorus olitorius HOM05D000258 ORTHO05D000153 4.2e-17 93.2 217 32.3
Duzib187G1764 Durio zibethinus HOM05D004262 ORTHO05D004886 4.2e-17 93.2 368 28.0
FAN23G1672 Fragaria x ananassa HOM05D004262 ORTHO05D004886 7.1e-17 92.4 270 28.9
FAN28G2830 Fragaria x ananassa HOM05D004262 ORTHO05D004886 7.1e-17 92.4 245 31.0
Phvul.003G208800 Phaseolus vulgaris HOM05D004262 ORTHO05D004886 7.1e-17 92.4 225 32.9
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 7.1e-17 92.4 277 31.0
Sabra16G0193600 Salix brachista HOM05D004262 ORTHO05D004886 9.3e-17 92.0 267 29.6
MELO3C023273.2 Cucumis melo HOM05D004262 ORTHO05D004886 1.2e-16 91.7 273 31.5
Lj4C857T4 Lonicera japonica HOM05D004262 ORTHO05D004886 1.6e-16 91.3 174 36.8
Glyma.04G218102 Glycine max HOM05D004262 ORTHO05D004886 2.1e-16 90.9 110 42.7
Glyma.05G045500 Glycine max HOM05D004262 ORTHO05D004886 4.6e-16 89.7 74 58.1
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 4.6e-16 89.7 216 35.2
PGR119G1219 Punica granatum HOM05D004262 ORTHO05D004886 6.0e-16 89.4 226 33.6
Cc07_g17550 Coffea canephora HOM05D004262 ORTHO05D004886 7.9e-16 89.0 230 32.2
VMungo1215G2230 Vigna mungo HOM05D004262 ORTHO05D004886 7.9e-16 89.0 224 33.0
HPP92_002646 Vanilla planifolia HOM05D004262 ORTHO05D004886 1.0e-15 88.6 209 34.9
CARHR278700 Cardamine hirsuta HOM05D004262 ORTHO05D004886 1.3e-15 88.2 417 24.9
Glyma.17G127700 Glycine max HOM05D004262 ORTHO05D004886 1.3e-15 88.2 74 56.8
Thhalv10012635m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 1.8e-15 87.8 236 33.5
Potri.019G004000 Populus trichocarpa HOM05D004262 ORTHO05D004886 1.8e-15 87.8 227 33.0
CsaV3_2G018000 Cucumis sativus L. HOM05D004262 ORTHO05D004886 6.7e-15 85.9 230 30.9
Aqoxy5G02078 Aquilegia oxysepala HOM05D004262 ORTHO05D004886 1.1e-14 85.1 219 33.8
BcaB07g29753 Brassica carinata HOM05D004262 ORTHO05D004886 1.1e-14 85.1 434 24.7
EL10Ac6g15245 Beta vulgaris HOM05D004262 ORTHO05D004886 1.9e-14 84.3 231 32.5
AT5G09840 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 2.5e-14 84.0 250 30.4
Hund19612 Selenicereus undatus HOM05D004262 ORTHO05D004886 4.3e-14 83.2 229 31.0
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 5.7e-14 82.8 244 31.6
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 5.7e-14 82.8 229 32.8
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 5.7e-14 82.8 229 32.8
SalBow8G4827 Salvia bowleyana HOM05D004262 ORTHO05D004886 5.7e-14 82.8 225 30.2
VMungo0022G0001 Vigna mungo HOM05D004262 ORTHO05D004886 7.4e-14 82.4 74 54.1
Aa31LG3G17280 Aethionema arabicum HOM05D004262 ORTHO05D004886 9.7e-14 82.0 345 27.0
CANSAT01G2046 Cannabis sativa HOM05D004262 ORTHO05D004886 4.8e-13 79.7 98 48.0
Hund03495 Selenicereus undatus HOM05D004262 ORTHO05D004886 8.2e-13 79.0 221 29.9
PSO675G0841 Papaver somniferum HOM05D004262 ORTHO05D004886 1.8e-12 77.8 289 26.3
TPR.G12261 Trifolium pratense HOM05D004262 ORTHO05D004886 1.8e-12 77.8 93 48.4
Thhalv10005625m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 6.9e-12 75.9 244 28.7
Zm00001eb139430 Zea mays HOM05D004262 ORTHO05D004886 6.9e-12 75.9 222 32.0
FAN26G0764 Fragaria x ananassa HOM05D004262 ORTHO05D004886 1.2e-11 75.1 109 39.4
DCAR_001416 Daucus carota HOM05D004262 ORTHO05D004886 2.6e-11 73.9 169 32.5
AL8G42160 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 4.5e-11 73.2 278 27.3
PSO675G3917 Papaver somniferum HOM05D004262 ORTHO05D004886 4.5e-11 73.2 433 21.5
Os12g0162900 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 5.9e-11 72.8 195 32.3
AL6G20250 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 2.2e-10 70.9 84 42.9
A10p27620 Brassica napus HOM05D004262 ORTHO05D004886 2.2e-10 70.9 76 44.7
BraA10t44814Z Brassica rapa HOM05D004262 ORTHO05D004886 2.2e-10 70.9 76 44.7
SHI11519 Sapria himalayana HOM05D004262 ORTHO05D004886 2.2e-10 70.9 167 29.3
AUR62003631 Chenopodium quinoa HOM05D004262 ORTHO05D004886 2.9e-10 70.5 254 27.2
ATR0820G094 Amborella trichopoda HOM05D004262 ORTHO05D004886 3.8e-10 70.1 169 33.1
C09p67680 Brassica napus HOM05D004262 ORTHO05D004886 5.0e-10 69.7 76 44.7
BolC9t59530H Brassica oleracea HOM05D004262 ORTHO05D004886 5.0e-10 69.7 76 44.7
CARHR203550 Cardamine hirsuta HOM05D004262 ORTHO05D004886 8.5e-10 68.9 77 44.2
Medtr1g008910 Medicago truncatula HOM05D004262 ORTHO05D004886 1.1e-09 68.6 50 70.0
Sp6g33570 Schrenkiella parvula HOM05D004262 ORTHO05D004886 2.5e-09 67.4 84 40.5
THA.LOC104799402 Tarenaya hassleriana HOM05D004262 ORTHO05D004886 2.5e-09 67.4 78 38.5
BcaB08g37177 Brassica carinata HOM05D004262 ORTHO05D004886 3.2e-09 67.0 76 43.4
AUR62017940 Chenopodium quinoa HOM05D004262 ORTHO05D004886 4.2e-09 66.6 85 36.5
Gohir.D11G259666 Gossypium hirsutum HOM05D004262 ORTHO05D004886 4.2e-09 66.6 74 40.5
Sp2g27780 Schrenkiella parvula HOM05D004262 ORTHO05D004886 7.2e-09 65.9 78 43.6
Solyc11g005440.2 Solanum lycopersicum HOM05D004262 ORTHO05D004886 1.6e-08 64.7 73 47.9
Sopen11g001450 Solanum pennellii HOM05D004262 ORTHO05D004886 1.6e-08 64.7 73 47.9
PGSC0003DMG400003967 Solanum tuberosum HOM05D004262 ORTHO05D004886 1.6e-08 64.7 73 47.9
Gorai.007G277700 Gossypium raimondii HOM05D004262 ORTHO05D004886 3.6e-08 63.5 74 37.8
AT5G64710 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 4.6e-08 63.2 77 40.3
Carub.0008s2552 Capsella rubella HOM05D004262 ORTHO05D004886 4.6e-08 63.2 77 41.6
Ah.02g122290 Amaranthus hybridus HOM05D004262 ORTHO05D004886 5.1e-07 59.7 80 37.5
Lj2A577G25 Lonicera japonica HOM05D004262 ORTHO05D004886 1.9e-06 57.8 235 28.9
CDE06G2757 Ceratophyllum demersum HOM05D004262 ORTHO05D004886 2.5e-06 57.4 72 37.5
Os11g0167300 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 5.7e-06 56.2 74 40.5


User provided reference genes

Program Settings