Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g007510 Medicago truncatula HOM05D000826 ORTHO05D004603 6.1e-58 227.3 113 100.0
TPR.G32122 Trifolium pratense HOM05D000826 ORTHO05D004603 1.2e-42 176.4 109 80.7
arahy.Tifrunner.gnm1.ann1.7661JY Arachis hypogaea HOM05D000826 ORTHO05D004603 5.7e-32 141.0 111 66.7
arahy.Tifrunner.gnm1.ann1.X7CJIX Arachis hypogaea HOM05D000826 ORTHO05D004603 5.7e-32 141.0 111 66.7
Glyma.07G118300 Glycine max HOM05D000826 ORTHO05D004603 1.4e-30 136.3 110 68.2
Lj3g0004181 Lotus japonicus HOM05D000826 ORTHO05D004603 2.0e-29 132.5 110 67.3
VMungo0720G2303 Vigna mungo HOM05D000826 ORTHO05D004603 5.0e-28 127.9 110 65.5
Phvul.006G002000 Phaseolus vulgaris HOM05D000826 ORTHO05D004603 4.7e-26 121.3 110 61.8
VMungo0647G2353 Vigna mungo HOM05D000826 ORTHO05D004603 8.0e-26 120.6 110 61.8
Glyma.10G255400 Glycine max HOM05D000826 ORTHO05D004603 8.9e-25 117.1 100 67.0
GSVIVG01020266001 Vitis vinifera HOM05D000826 ORTHO05D004603 1.3e-15 86.7 114 49.1
Lalb_Chr03g0040931 Lupinus albus HOM05D000826 ORTHO05D004603 1.7e-15 86.3 117 45.3
Ca_07418_v3 Cicer arietinum L. HOM05D000826 ORTHO05D004603 2.9e-15 85.5 115 44.3
Haze_07840 Corylus avellana HOM05D000826 ORTHO05D004603 4.9e-15 84.7 111 45.0
Cfa019411 Carpinus fangiana HOM05D000826 ORTHO05D004603 8.3e-15 84.0 111 45.0
Lj1g0012152 Lotus japonicus HOM05D000826 ORTHO05D004603 1.4e-14 83.2 112 45.5
TAR626G1128 Trochodendron aralioides HOM05D000826 ORTHO05D004603 3.2e-14 82.0 113 42.5
Manes.06G174300 Manihot esculenta HOM05D000826 ORTHO05D004603 9.2e-14 80.5 77 53.2
Nn3g18586 Nelumbo nucifera HOM05D000826 ORTHO05D004603 2.0e-13 79.3 116 40.5
Psat0s4940g0040 Pisum sativum HOM05D000826 ORTHO05D004603 2.0e-13 79.3 115 46.1
Thecc.06G035900 Theobroma cacao HOM05D000826 ORTHO05D004603 2.0e-13 79.3 76 59.2
Duzib235G1199 Durio zibethinus HOM05D000826 ORTHO05D004603 2.7e-13 79.0 71 59.2
Potri.005G095800 Populus trichocarpa HOM05D000826 ORTHO05D004603 2.7e-13 79.0 71 52.1
Duzib160G0893 Durio zibethinus HOM05D000826 ORTHO05D004603 3.5e-13 78.6 71 56.3
Dinv38159 Davidia involucrata HOM05D000826 ORTHO05D004603 6.0e-13 77.8 115 44.3
Actinidia18227 Actinidia chinensis HOM05D000826 ORTHO05D004603 7.8e-13 77.4 114 43.0
RcHm_v2.0_Chr5g0026121 Rosa chinensis HOM05D000826 ORTHO05D004603 1.0e-12 77.0 111 45.9
Dinv23314 Davidia involucrata HOM05D000826 ORTHO05D004603 1.3e-12 76.6 110 42.7
TAR629G0022 Trochodendron aralioides HOM05D000826 ORTHO05D004603 1.3e-12 76.6 113 43.4
Sabra05G0079000 Salix brachista HOM05D000826 ORTHO05D004603 1.7e-12 76.3 71 49.3
COL.COLO4_11832 Corchorus olitorius HOM05D000826 ORTHO05D004603 3.0e-12 75.5 77 54.5
FvH4_3g15500 Fragaria vesca HOM05D000826 ORTHO05D004603 5.0e-12 74.7 87 48.3
FAN11G0980 Fragaria x ananassa HOM05D000826 ORTHO05D004603 5.0e-12 74.7 87 48.3
TPR.G10177 Trifolium pratense HOM05D000826 ORTHO05D004603 5.0e-12 74.7 42 76.2
FAN16G1939 Fragaria x ananassa HOM05D000826 ORTHO05D004603 1.1e-11 73.6 88 52.3
TWI12G0258 Tripterygium wilfordii HOM05D000826 ORTHO05D004603 1.1e-11 73.6 115 41.7
Haze_27692 Corylus avellana HOM05D000826 ORTHO05D004603 1.5e-11 73.2 64 59.4
Cpa.g.c38612 Carica papaya HOM05D000826 ORTHO05D004603 1.9e-11 72.8 64 54.7
FAN25G3720 Fragaria x ananassa HOM05D000826 ORTHO05D004603 1.9e-11 72.8 87 47.1
QL04p077169 Quercus lobata HOM05D000826 ORTHO05D004603 1.9e-11 72.8 77 53.2
Medtr7g451450 Medicago truncatula HOM05D000826 ORTHO05D004603 2.5e-11 72.4 111 40.5
FAN21G1090 Fragaria x ananassa HOM05D000826 ORTHO05D004603 3.3e-11 72.0 86 46.5
Gohir.D09G091300 Gossypium hirsutum HOM05D000826 ORTHO05D004603 4.3e-11 71.6 75 48.0
CSS0020600 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D004603 7.3e-11 70.9 76 47.4
CiPaw.02G160400 Carya illinoinensis HOM05D000826 ORTHO05D004603 7.3e-11 70.9 70 50.0
Potri.017G053500 Populus trichocarpa HOM05D000826 ORTHO05D004603 7.3e-11 70.9 74 54.1
MD10G1204400 Malus domestica HOM05D000826 ORTHO05D004603 9.5e-11 70.5 88 50.0
Prupe.4G137500 Prunus persica HOM05D000826 ORTHO05D004603 9.5e-11 70.5 68 55.9
Sabra17G0040700 Salix brachista HOM05D000826 ORTHO05D004603 1.2e-10 70.1 62 59.7
Sabra17G0045500 Salix brachista HOM05D000826 ORTHO05D004603 1.2e-10 70.1 62 59.7
Gohir.A09G091300 Gossypium hirsutum HOM05D000826 ORTHO05D004603 1.6e-10 69.7 75 48.0
Cfa001913 Carpinus fangiana HOM05D000826 ORTHO05D004603 2.1e-10 69.3 64 57.8
Gorai.006G107600 Gossypium raimondii HOM05D000826 ORTHO05D004603 2.1e-10 69.3 75 46.7
PGR031G0489 Punica granatum HOM05D000826 ORTHO05D004603 2.1e-10 69.3 110 41.8
MD05G1222800 Malus domestica HOM05D000826 ORTHO05D004603 2.8e-10 68.9 78 52.6
MD05G1223000 Malus domestica HOM05D000826 ORTHO05D004603 2.8e-10 68.9 78 52.6
SEGI_11338 Sequoiadendron giganteum HOM05D000826 ORTHO05D004603 2.8e-10 68.9 42 69.0
Sc10g0006110 Simmondsia chinensis HOM05D000826 ORTHO05D004603 2.8e-10 68.9 43 69.8
Aqoxy1G02396 Aquilegia oxysepala HOM05D000826 ORTHO05D004603 4.7e-10 68.2 110 35.5
Manes.11G063000 Manihot esculenta HOM05D000826 ORTHO05D004603 4.7e-10 68.2 75 53.3
Hma1.2p1_0109F.1_g052260 Hydrangea macrophylla HOM05D000826 ORTHO05D004603 6.2e-10 67.8 111 41.4
SGA_v2.0_scaffold117G32330 Striga asiatica HOM05D000826 ORTHO05D004603 6.2e-10 67.8 65 50.8
Ah.10g030960 Amaranthus hybridus HOM05D000826 ORTHO05D004603 8.1e-10 67.4 64 50.0
CiPaw.02G160300 Carya illinoinensis HOM05D000826 ORTHO05D004603 8.1e-10 67.4 64 51.6
Cc11_g02220 Coffea canephora HOM05D000826 ORTHO05D004603 8.1e-10 67.4 100 43.0
Ciclev10005019m.g Citrus clementina HOM05D000826 ORTHO05D004603 1.4e-09 66.6 70 51.4
BcaC03g15945 Brassica carinata HOM05D000826 ORTHO05D004603 4.0e-09 65.1 82 42.7
BcaC03g15948 Brassica carinata HOM05D000826 ORTHO05D004603 4.0e-09 65.1 82 42.7
C02p37070 Brassica napus HOM05D000826 ORTHO05D004603 4.0e-09 65.1 82 42.7
BolC2t09722H Brassica oleracea HOM05D000826 ORTHO05D004603 4.0e-09 65.1 82 42.7
Eucgr.F04428 Eucalyptus grandis HOM05D000826 ORTHO05D004603 4.0e-09 65.1 44 63.6
SEGI_34235 Sequoiadendron giganteum HOM05D000826 ORTHO05D004603 4.0e-09 65.1 42 64.3
CANSAT80G1007 Cannabis sativa HOM05D000826 ORTHO05D004603 5.2e-09 64.7 43 60.5
AUR62011453 Chenopodium quinoa HOM05D000826 ORTHO05D004603 5.2e-09 64.7 72 45.8
Migut.D01092 Erythranthe guttata HOM05D000826 ORTHO05D004603 5.2e-09 64.7 65 52.3
Eucgr.F04303 Eucalyptus grandis HOM05D000826 ORTHO05D004603 5.2e-09 64.7 44 63.6
Sed0023373 Sechium edule HOM05D000826 ORTHO05D004603 5.2e-09 64.7 42 66.7
unitig_747.g21302 Utricularia gibba HOM05D000826 ORTHO05D004603 5.2e-09 64.7 64 48.4
Aqoxy1G01976 Aquilegia oxysepala HOM05D000826 ORTHO05D004603 6.8e-09 64.3 82 41.5
MELO3C023453.2 Cucumis melo HOM05D000826 ORTHO05D004603 6.8e-09 64.3 68 47.1
Lj6A64T35 Lonicera japonica HOM05D000826 ORTHO05D004603 6.8e-09 64.3 113 37.2
HPP92_015163 Vanilla planifolia HOM05D000826 ORTHO05D004603 6.8e-09 64.3 92 41.3
EL10Ac9g21850 Beta vulgaris HOM05D000826 ORTHO05D004603 8.9e-09 63.9 69 52.2
A02p23340 Brassica napus HOM05D000826 ORTHO05D004603 8.9e-09 63.9 50 58.0
BraA02t07328Z Brassica rapa HOM05D000826 ORTHO05D004603 8.9e-09 63.9 50 58.0
CiPaw.01G251800 Carya illinoinensis HOM05D000826 ORTHO05D004603 8.9e-09 63.9 64 51.6
AUR62016604 Chenopodium quinoa HOM05D000826 ORTHO05D004603 8.9e-09 63.9 63 50.8
Nitab4.5_0000233g0210 Nicotiana tabacum HOM05D000826 ORTHO05D004603 8.9e-09 63.9 74 44.6
Oeu029905.1 Olea europaea HOM05D000826 ORTHO05D004603 8.9e-09 63.9 44 63.6
Sopen08g028700 Solanum pennellii HOM05D000826 ORTHO05D004603 8.9e-09 63.9 89 41.6
MSTRG.4694 Avicennia marina HOM05D000826 ORTHO05D004603 1.2e-08 63.5 66 48.5
Cc04_g04810 Coffea canephora HOM05D000826 ORTHO05D004603 1.2e-08 63.5 79 41.8
CsaV3_7G032040 Cucumis sativus L. HOM05D000826 ORTHO05D004603 1.5e-08 63.2 68 45.6
SalBow6G3878 Salvia bowleyana HOM05D000826 ORTHO05D004603 1.5e-08 63.2 66 48.5
THA.LOC104813578 Tarenaya hassleriana HOM05D000826 ORTHO05D004603 1.5e-08 63.2 42 64.3
FvH4_6g29020 Fragaria vesca HOM05D000826 ORTHO05D004603 2.0e-08 62.8 82 45.1
FAN14G1620 Fragaria x ananassa HOM05D000826 ORTHO05D004603 2.0e-08 62.8 82 45.1
Oeu018792.1 Olea europaea HOM05D000826 ORTHO05D004603 2.0e-08 62.8 69 49.3
Hund01640 Selenicereus undatus HOM05D000826 ORTHO05D004603 2.6e-08 62.4 64 48.4
ClCG09G003180 Citrullus lanatus HOM05D000826 ORTHO05D004603 3.4e-08 62.0 87 43.7
Peaxi162Scf00108g01311 Petunia axillaris HOM05D000826 ORTHO05D004603 3.4e-08 62.0 94 41.5
Sp5g35170 Schrenkiella parvula HOM05D000826 ORTHO05D004603 3.4e-08 62.0 81 45.7
Nitab4.5_0005460g0020 Nicotiana tabacum HOM05D000826 ORTHO05D004603 4.4e-08 61.6 67 47.8
Prupe.3G094600 Prunus persica HOM05D000826 ORTHO05D004603 4.4e-08 61.6 67 52.2
RcHm_v2.0_Chr2g0133691 Rosa chinensis HOM05D000826 ORTHO05D004603 4.4e-08 61.6 77 45.5
Carub.0002s2695 Capsella rubella HOM05D000826 ORTHO05D004603 5.8e-08 61.2 55 58.2
DCAR_016283 Daucus carota HOM05D000826 ORTHO05D004603 5.8e-08 61.2 64 45.3
Solyc08g080370.3 Solanum lycopersicum HOM05D000826 ORTHO05D004603 5.8e-08 61.2 46 58.7
PGSC0003DMG400022742 Solanum tuberosum HOM05D000826 ORTHO05D004603 5.8e-08 61.2 46 58.7
CARHR073920 Cardamine hirsuta HOM05D000826 ORTHO05D004603 7.5e-08 60.8 79 43.0
Rhsim03G0186600 Rhododendron simsii HOM05D000826 ORTHO05D004603 7.5e-08 60.8 79 48.1
Rhsim12G0188700 Rhododendron simsii HOM05D000826 ORTHO05D004603 7.5e-08 60.8 79 43.0
THA.LOC104812451 Tarenaya hassleriana HOM05D000826 ORTHO05D004603 7.5e-08 60.8 38 71.1
CAN.G981.30 Capsicum annuum HOM05D000826 ORTHO05D004603 9.9e-08 60.5 41 61.0
Pp3c16_23960 Physcomitrium patens HOM05D000826 ORTHO05D004603 1.3e-07 60.1 53 54.7
QL05p034039 Quercus lobata HOM05D000826 ORTHO05D004603 1.3e-07 60.1 38 68.4
AL2G40850 Arabidopsis lyrata HOM05D000826 ORTHO05D004603 1.7e-07 59.7 63 47.6
Thhalv10018519m.g Eutrema salsugineum HOM05D000826 ORTHO05D004603 1.7e-07 59.7 71 46.5
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-07 59.7 82 43.9
Sed0016290 Sechium edule HOM05D000826 ORTHO05D004603 1.7e-07 59.7 66 47.0
Actinidia25439 Actinidia chinensis HOM05D000826 ORTHO05D004603 2.2e-07 59.3 38 63.2
AT1G80600 Arabidopsis thaliana HOM05D000826 ORTHO05D004603 2.2e-07 59.3 63 47.6
BcaB05g25242 Brassica carinata HOM05D000826 ORTHO05D004603 2.2e-07 59.3 80 43.8
Nn4g25143 Nelumbo nucifera HOM05D000826 ORTHO05D004603 2.9e-07 58.9 38 60.5
PSO063G5625 Papaver somniferum HOM05D000826 ORTHO05D004603 3.7e-07 58.5 108 32.4
vmacro16867 Vaccinium macrocarpon HOM05D000826 ORTHO05D004603 4.9e-07 58.2 41 61.0
Zm00001eb264960 Zea mays HOM05D000826 ORTHO05D004603 4.9e-07 58.2 45 55.6
Aa31LG4G870 Aethionema arabicum HOM05D000826 ORTHO05D004603 6.4e-07 57.8 46 54.3
ATR0763G207 Amborella trichopoda HOM05D000826 ORTHO05D004603 6.4e-07 57.8 43 55.8
BolC6t40407H Brassica oleracea HOM05D000826 ORTHO05D004603 8.3e-07 57.4 75 42.7
Lsat_1_v5_gn_5_7861 Lactuca sativa HOM05D000826 ORTHO05D004603 1.1e-06 57.0 39 61.5
PSO782G1349 Papaver somniferum HOM05D000826 ORTHO05D004603 1.1e-06 57.0 88 37.5
Pp3c21_11930 Physcomitrium patens HOM05D000826 ORTHO05D004603 1.4e-06 56.6 47 48.9
C06p53930 Brassica napus HOM05D000826 ORTHO05D004603 1.9e-06 56.2 75 42.7
PSO170G1087 Papaver somniferum HOM05D000826 ORTHO05D004603 1.9e-06 56.2 70 40.0
A07p45100 Brassica napus HOM05D000826 ORTHO05D004603 2.4e-06 55.8 75 41.3
BraA07t32013Z Brassica rapa HOM05D000826 ORTHO05D004603 2.4e-06 55.8 75 41.3
CBR_g37699 Chara braunii HOM05D000826 ORTHO05D004603 5.4e-06 54.7 39 51.3
SMO134G0192 Selaginella moellendorffii HOM05D000826 ORTHO05D004603 9.2e-06 53.9 44 50.0
SMO274G0061 Selaginella moellendorffii HOM05D000826 ORTHO05D004603 9.2e-06 53.9 44 50.0


User provided reference genes

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