Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g007445 Medicago truncatula HOM05D000173 ORTHO05D004400 2.3e-44 181.8 87 100.0
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 5.1e-20 100.9 73 72.6
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.9e-19 99.0 73 71.2
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 2.5e-19 98.6 61 83.6
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 9.5e-19 96.7 60 81.7
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-18 96.3 53 94.3
Ca_23131_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-18 96.3 53 94.3
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.8e-17 92.4 59 83.1
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 2.4e-17 92.0 57 82.5
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 3.1e-17 91.7 53 84.9
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 4.0e-17 91.3 58 79.3
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 5.2e-17 90.9 53 84.9
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 6.8e-17 90.5 56 82.1
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 6.8e-17 90.5 57 77.2
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 6.8e-17 90.5 69 68.1
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 8.9e-17 90.1 64 76.6
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 8.9e-17 90.1 57 86.0
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 1.2e-16 89.7 53 84.9
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.2e-16 89.7 53 84.9
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.2e-16 89.7 50 92.0
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 1.5e-16 89.4 53 83.0
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 2.0e-16 89.0 57 80.7
AUR62025879 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.0e-16 89.0 65 72.3
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 2.0e-16 89.0 56 80.4
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 3.4e-16 88.2 69 66.7
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 7.6e-16 87.0 51 86.3
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 7.6e-16 87.0 53 86.8
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 7.6e-16 87.0 60 73.3
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.3e-15 86.3 53 81.1
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 1.7e-15 85.9 55 80.0
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 2.2e-15 85.5 55 80.0
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 2.2e-15 85.5 55 80.0
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 2.2e-15 85.5 53 83.0
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 2.2e-15 85.5 53 83.0
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 2.2e-15 85.5 52 84.6
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 2.2e-15 85.5 51 84.3
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.2e-15 85.5 51 84.3
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.2e-15 85.5 51 84.3
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.2e-15 85.5 51 84.3
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 2.2e-15 85.5 53 77.4
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 2.9e-15 85.1 81 60.5
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 2.9e-15 85.1 53 81.1
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 4.9e-15 84.3 76 57.9
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 4.9e-15 84.3 53 75.5
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 4.9e-15 84.3 54 85.2
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 4.9e-15 84.3 53 75.5
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 4.9e-15 84.3 53 77.4
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 6.4e-15 84.0 58 70.7
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 6.4e-15 84.0 52 82.7
Cc04_g07400 Coffea canephora HOM05D000173 ORTHO05D004400 6.4e-15 84.0 53 79.2
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 6.4e-15 84.0 51 82.4
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 6.4e-15 84.0 75 64.0
Haze_04561 Corylus avellana HOM05D000173 ORTHO05D004400 8.4e-15 83.6 52 80.8
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 8.4e-15 83.6 50 86.0
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 1.1e-14 83.2 49 85.7
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.1e-14 83.2 53 77.4
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 1.4e-14 82.8 48 85.4
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 1.4e-14 82.8 53 79.2
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 1.4e-14 82.8 53 79.2
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.4e-14 82.8 63 65.1
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.4e-14 82.8 53 79.2
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.4e-14 82.8 50 82.0
GSVIVG01008255001 Vitis vinifera HOM05D000173 ORTHO05D004400 1.4e-14 82.8 54 77.8
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 1.9e-14 82.4 52 78.8
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.9e-14 82.4 52 78.8
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.9e-14 82.4 51 80.4
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 2.4e-14 82.0 53 79.2
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 2.4e-14 82.0 47 87.2
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 2.4e-14 82.0 50 82.0
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 3.2e-14 81.6 52 78.8
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 3.2e-14 81.6 75 62.7
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 3.2e-14 81.6 50 78.0
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 4.2e-14 81.3 59 71.2
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 4.2e-14 81.3 47 87.2
TAR365G0790 Trochodendron aralioides HOM05D000173 ORTHO05D004400 4.2e-14 81.3 47 87.2
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 4.2e-14 81.3 47 80.9
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 4.2e-14 81.3 47 80.9
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 5.4e-14 80.9 50 82.0
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 5.4e-14 80.9 50 82.0
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 5.4e-14 80.9 52 76.9
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 5.4e-14 80.9 52 76.9
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 5.4e-14 80.9 52 76.9
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 7.1e-14 80.5 49 81.6
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 7.1e-14 80.5 47 80.9
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 1.2e-13 79.7 47 85.1
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.2e-13 79.7 48 83.3
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 2.1e-13 79.0 74 56.8
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 2.1e-13 79.0 40 95.0
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 2.7e-13 78.6 49 77.6
ATR0737G114 Amborella trichopoda HOM05D000173 ORTHO05D004400 3.5e-13 78.2 76 56.6
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 3.5e-13 78.2 46 84.8
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 4.6e-13 77.8 71 60.6
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 6.0e-13 77.4 50 80.0
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 7.8e-13 77.0 59 66.1
AT1G73910 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 7.8e-13 77.0 54 75.9
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 7.8e-13 77.0 46 82.6
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 1.0e-12 76.6 55 74.5
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 1.0e-12 76.6 83 53.0
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.3e-12 76.3 57 70.2
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 1.7e-12 75.9 57 68.4
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 3.0e-12 75.1 65 66.2
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 3.0e-12 75.1 66 65.2
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 3.9e-12 74.7 49 81.6
Carub.0002s2068 Capsella rubella HOM05D000173 ORTHO05D004400 3.9e-12 74.7 54 72.2
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 5.1e-12 74.3 49 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 1.1e-11 73.2 75 57.3
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.1e-11 73.2 44 81.8
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 1.1e-11 73.2 44 81.8
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 1.1e-11 73.2 44 81.8
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.1e-11 73.2 44 81.8
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.1e-11 73.2 44 81.8
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 1.5e-11 72.8 44 79.5
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 1.5e-11 72.8 44 79.5
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 1.5e-11 72.8 44 79.5
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.5e-11 72.8 47 78.7
Duzib093G1840 Durio zibethinus HOM05D000173 ORTHO05D004400 2.5e-11 72.0 53 67.9
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 4.3e-11 71.2 59 66.1
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 4.3e-11 71.2 43 79.1
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 5.6e-11 70.9 43 83.7
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 7.3e-11 70.5 55 69.1
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 1.6e-10 69.3 38 84.2
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 1.6e-10 69.3 47 76.6
Dinv07361 Davidia involucrata HOM05D000173 ORTHO05D004400 2.8e-10 68.6 38 92.1
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 6.2e-10 67.4 75 53.3
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 1.1e-09 66.6 52 67.3
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 1.1e-09 66.6 42 76.2
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.1e-09 66.6 40 85.0
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 1.1e-09 66.6 53 64.2
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 2.4e-09 65.5 65 55.4
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 3.1e-09 65.1 46 78.3
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 4.0e-09 64.7 42 73.8
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 4.0e-09 64.7 36 91.7
C09p46060 Brassica napus HOM05D000173 ORTHO05D004400 6.9e-09 63.9 49 71.4
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 6.9e-09 63.9 40 80.0
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 6.9e-09 63.9 37 81.1
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.2e-08 63.2 39 82.1
BcaC04g20234 Brassica carinata HOM05D000173 ORTHO05D004400 1.5e-08 62.8 39 82.1
Duzib093G1728 Durio zibethinus HOM05D000173 ORTHO05D004400 1.5e-08 62.8 53 60.4
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 2.0e-08 62.4 42 73.8
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.0e-08 62.4 123 38.2
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 3.4e-08 61.6 44 68.2
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 5.8e-08 60.8 53 54.7
Medtr5g066390 Medicago truncatula HOM05D000027 ORTHO05D000066 7.6e-08 60.5 35 88.6
BcaC02g09051 Brassica carinata HOM05D000173 ORTHO05D004400 1.7e-07 59.3 34 82.4
Ca_14791_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.1e-06 56.6 32 90.6
Cre06.g249200 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D004400 7.1e-06 53.9 38 65.8


User provided reference genes

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