Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g006650 Medicago truncatula HOM05D004161 ORTHO05D031074 1.3e-35 152.5 78 100.0
Medtr3g108790 Medicago truncatula HOM05D004161 ORTHO05D005770 5.2e-32 140.6 77 93.5
Psat5g024160 Pisum sativum HOM05D004161 ORTHO05D005770 1.3e-30 136.0 77 90.9
TPR.G12320 Trifolium pratense HOM05D004161 ORTHO05D005770 2.2e-30 135.2 77 89.6
Glyma.04G075000 Glycine max HOM05D004161 ORTHO05D005770 8.3e-30 133.3 77 87.0
Glyma.06G076000 Glycine max HOM05D004161 ORTHO05D005770 1.1e-29 132.9 77 87.0
Phvul.009G100700 Phaseolus vulgaris HOM05D004161 ORTHO05D005770 1.1e-29 132.9 77 87.0
Lj1g0012076 Lotus japonicus HOM05D004161 ORTHO05D005770 1.4e-29 132.5 78 89.7
Ca_15670_v3 Cicer arietinum L. HOM05D004161 ORTHO05D005770 2.4e-29 131.7 78 88.5
VMungo1309G2307 Vigna mungo HOM05D004161 ORTHO05D005770 2.4e-29 131.7 77 87.0
Lalb_Chr23g0269071 Lupinus albus HOM05D004161 ORTHO05D005770 3.1e-29 131.3 77 87.0
Lalb_Chr08g0243601 Lupinus albus HOM05D004161 ORTHO05D005770 1.7e-27 125.6 77 83.1
Haze_21728 Corylus avellana HOM05D004161 ORTHO05D005770 5.0e-27 124.0 77 81.8
CiPaw.07G213300 Carya illinoinensis HOM05D004161 ORTHO05D005770 8.5e-27 123.2 77 81.8
TWI34G1526 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 1.9e-26 122.1 77 80.5
TWI32G1088 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 2.5e-26 121.7 77 80.5
Cfa013264 Carpinus fangiana HOM05D004161 ORTHO05D005770 3.2e-26 121.3 77 80.5
MELO3C011193.2 Cucumis melo HOM05D004161 ORTHO05D005770 4.2e-26 120.9 78 78.2
Dinv10170 Davidia involucrata HOM05D004161 ORTHO05D005770 4.2e-26 120.9 77 80.5
GSVIVG01023827001 Vitis vinifera HOM05D004161 ORTHO05D005770 4.2e-26 120.9 77 80.5
arahy.Tifrunner.gnm1.ann1.DD3LGG Arachis hypogaea HOM05D004161 ORTHO05D005770 5.5e-26 120.6 74 86.5
CsaV3_2G031440 Cucumis sativus L. HOM05D004161 ORTHO05D005770 7.2e-26 120.2 78 78.2
FAN15G1150 Fragaria x ananassa HOM05D004161 ORTHO05D005770 7.2e-26 120.2 77 81.8
Atru.chr7.2634 Acer truncatum HOM05D004161 ORTHO05D005770 9.4e-26 119.8 77 77.9
Sed0011095 Sechium edule HOM05D004161 ORTHO05D005770 9.4e-26 119.8 78 76.9
RcHm_v2.0_Chr6g0304891 Rosa chinensis HOM05D004161 ORTHO05D005770 1.6e-25 119.0 77 80.5
Hma1.2p1_0432F.1_g151800 Hydrangea macrophylla HOM05D004161 ORTHO05D005770 2.1e-25 118.6 74 82.4
FAN20G0045 Fragaria x ananassa HOM05D004161 ORTHO05D005770 2.7e-25 118.2 77 80.5
Lj7C749T8 Lonicera japonica HOM05D004161 ORTHO05D005770 2.7e-25 118.2 77 77.9
Sed0017284 Sechium edule HOM05D004161 ORTHO05D005770 6.1e-25 117.1 78 74.4
Nitab4.5_0001586g0240 Nicotiana tabacum HOM05D004161 ORTHO05D005770 8.0e-25 116.7 77 79.2
Actinidia34376 Actinidia chinensis HOM05D004161 ORTHO05D005770 1.0e-24 116.3 77 77.9
Oeu019278.1 Olea europaea HOM05D004161 ORTHO05D005770 1.0e-24 116.3 77 75.3
QL12p025061 Quercus lobata HOM05D004161 ORTHO05D005770 1.4e-24 115.9 76 77.6
FvH4_2g36890 Fragaria vesca HOM05D004161 ORTHO05D005770 1.8e-24 115.5 78 80.8
FAN27G0727 Fragaria x ananassa HOM05D004161 ORTHO05D005770 1.8e-24 115.5 78 80.8
PGSC0003DMG400009240 Solanum tuberosum HOM05D004161 ORTHO05D005770 1.8e-24 115.5 77 80.5
CAN.G65.161 Capsicum annuum HOM05D004161 ORTHO05D005770 2.3e-24 115.2 77 77.9
Peaxi162Scf00180g00518 Petunia axillaris HOM05D004161 ORTHO05D005770 2.3e-24 115.2 77 77.9
Lsat_1_v5_gn_3_9100 Lactuca sativa HOM05D004161 ORTHO05D005770 4.0e-24 114.4 74 78.4
Sopen11g009190 Solanum pennellii HOM05D004161 ORTHO05D005770 4.0e-24 114.4 77 77.9
HanXRQChr17g0533271 Helianthus annuus HOM05D004161 ORTHO05D005770 5.2e-24 114.0 74 78.4
Prupe.1G460800 Prunus persica HOM05D004161 ORTHO05D005770 5.2e-24 114.0 82 75.6
Sabra18G0014200 Salix brachista HOM05D004161 ORTHO05D005770 5.2e-24 114.0 74 81.1
Nitab4.5_0002553g0070 Nicotiana tabacum HOM05D004161 ORTHO05D005770 6.8e-24 113.6 77 77.9
ECA246G1306 Erigeron canadensis HOM05D004161 ORTHO05D005770 8.8e-24 113.2 71 80.3
PGR142G1061 Punica granatum HOM05D004161 ORTHO05D005770 8.8e-24 113.2 77 75.3
SGA_v2.0_scaffold121G33036 Striga asiatica HOM05D004161 ORTHO05D005770 8.8e-24 113.2 77 76.6
CSS0014609 Camellia sinensis var. sinensis HOM05D004161 ORTHO05D005770 1.5e-23 112.5 77 75.3
Cc08_g06790 Coffea canephora HOM05D004161 ORTHO05D005770 1.5e-23 112.5 77 74.0
Eucgr.C02093 Eucalyptus grandis HOM05D004161 ORTHO05D005770 2.0e-23 112.1 77 74.0
vmacro01979 Vaccinium macrocarpon HOM05D004161 ORTHO05D005770 2.0e-23 112.1 77 75.3
Potri.018G006100 Populus trichocarpa HOM05D004161 ORTHO05D005770 2.6e-23 111.7 77 76.6
Potri.006G275100 Populus trichocarpa HOM05D004161 ORTHO05D005770 3.4e-23 111.3 77 75.3
Manes.16G136100 Manihot esculenta HOM05D004161 ORTHO05D005770 4.4e-23 110.9 77 72.7
Solyc11g017300.2 Solanum lycopersicum HOM05D004161 ORTHO05D005770 4.4e-23 110.9 77 76.6
Rhsim11G0155000 Rhododendron simsii HOM05D004161 ORTHO05D005770 5.7e-23 110.5 77 74.0
RhsimUnG0126200 Rhododendron simsii HOM05D004161 ORTHO05D005770 5.7e-23 110.5 77 74.0
Ciclev10008736m.g Citrus clementina HOM05D004161 ORTHO05D005770 7.5e-23 110.2 78 74.4
Solyc06g073150.3 Solanum lycopersicum HOM05D004161 ORTHO05D005770 7.5e-23 110.2 77 75.3
Sopen06g029500 Solanum pennellii HOM05D004161 ORTHO05D005770 7.5e-23 110.2 77 75.3
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 9.8e-23 109.8 59 94.9
Sabra06G0212900 Salix brachista HOM05D004161 ORTHO05D005770 9.8e-23 109.8 77 75.3
SGA_v2.0_scaffold169G38590 Striga asiatica HOM05D004161 ORTHO05D005770 9.8e-23 109.8 77 74.0
PGSC0003DMG400026918 Solanum tuberosum HOM05D004161 ORTHO05D005770 1.3e-22 109.4 77 75.3
CANSAT25G1154 Cannabis sativa HOM05D004161 ORTHO05D005770 1.7e-22 109.0 79 78.5
MD08G1130400 Malus domestica HOM05D004161 ORTHO05D005770 2.2e-22 108.6 83 69.9
SalBow8G4837 Salvia bowleyana HOM05D004161 ORTHO05D005770 3.7e-22 107.8 77 74.0
Migut.E01406 Erythranthe guttata HOM05D004161 ORTHO05D005770 4.9e-22 107.5 74 74.3
DCAR_027524 Daucus carota HOM05D004161 ORTHO05D005770 8.3e-22 106.7 74 73.0
MD15G1108500 Malus domestica HOM05D004161 ORTHO05D005770 8.3e-22 106.7 83 68.7
Manes.03G003400 Manihot esculenta HOM05D004161 ORTHO05D005770 8.3e-22 106.7 77 74.0
COL.COLO4_19041 Corchorus olitorius HOM05D004161 ORTHO05D005770 1.1e-21 106.3 77 74.0
Cpa.g.sc23.7 Carica papaya HOM05D004161 ORTHO05D005770 1.8e-21 105.5 78 74.4
Sp1g20380 Schrenkiella parvula HOM05D004161 ORTHO05D005770 2.4e-21 105.1 71 76.1
Duzib168G1137 Durio zibethinus HOM05D004161 ORTHO05D005770 3.1e-21 104.8 77 70.1
MBI16_g31792_MAGBIO Magnolia biondii HOM05D004161 ORTHO05D005770 3.1e-21 104.8 80 68.8
Thhalv10008042m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 5.4e-21 104.0 74 74.3
unitig_0.g2820 Utricularia gibba HOM05D004161 ORTHO05D005770 9.1e-21 103.2 78 71.8
Aa31LG4G9280 Aethionema arabicum HOM05D004161 ORTHO05D005770 2.0e-20 102.1 78 71.8
TAR626G0400 Trochodendron aralioides HOM05D004161 ORTHO05D005770 2.0e-20 102.1 80 68.8
BcaC05g26198 Brassica carinata HOM05D004161 ORTHO05D005770 3.5e-20 101.3 74 71.6
A09p41820 Brassica napus HOM05D004161 ORTHO05D005770 3.5e-20 101.3 74 71.6
C05p22060 Brassica napus HOM05D004161 ORTHO05D005770 3.5e-20 101.3 74 71.6
BolC5t30902H Brassica oleracea HOM05D004161 ORTHO05D005770 3.5e-20 101.3 74 71.6
BraA09t39671Z Brassica rapa HOM05D004161 ORTHO05D005770 3.5e-20 101.3 74 71.6
Duzib187G0390 Durio zibethinus HOM05D004161 ORTHO05D005770 3.5e-20 101.3 77 75.3
BcaB07g32287 Brassica carinata HOM05D004161 ORTHO05D005770 4.5e-20 100.9 74 71.6
Thecc.09G006500 Theobroma cacao HOM05D004161 ORTHO05D005770 5.9e-20 100.5 77 71.4
MSTRG.13941 Avicennia marina HOM05D004161 ORTHO05D005770 1.3e-19 99.4 79 67.1
Ah.11g043770 Amaranthus hybridus HOM05D004161 ORTHO05D005770 2.3e-19 98.6 77 66.2
Gohir.D05G067400 Gossypium hirsutum HOM05D004161 ORTHO05D005770 2.3e-19 98.6 77 68.8
Gorai.009G068200 Gossypium raimondii HOM05D004161 ORTHO05D005770 2.3e-19 98.6 77 68.8
unitig_747.g21902 Utricularia gibba HOM05D004161 ORTHO05D005770 2.3e-19 98.6 78 69.2
EL10Ac2g03746 Beta vulgaris HOM05D004161 ORTHO05D005770 2.9e-19 98.2 77 64.9
Zm00001eb068020 Zea mays HOM05D004161 ORTHO05D005770 2.9e-19 98.2 79 65.8
ATR0580G326 Amborella trichopoda HOM05D004161 ORTHO05D005770 3.8e-19 97.8 80 65.0
Gohir.A05G064800 Gossypium hirsutum HOM05D004161 ORTHO05D005770 5.0e-19 97.4 77 67.5
HanXRQChr10g0292121 Helianthus annuus HOM05D004161 ORTHO05D031074 1.1e-18 96.3 80 66.2
Os04g0654700 Oryza sativa ssp. japonica HOM05D004161 ORTHO05D005770 1.5e-18 95.9 77 63.6
AL2G30840 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 1.9e-18 95.5 78 66.7
Carub.0001s2242 Capsella rubella HOM05D004161 ORTHO05D005770 1.9e-18 95.5 75 70.7
AUR62009062 Chenopodium quinoa HOM05D004161 ORTHO05D005770 2.5e-18 95.1 77 66.2
AUR62020608 Chenopodium quinoa HOM05D004161 ORTHO05D005770 2.5e-18 95.1 77 66.2
HPP92_017054 Vanilla planifolia HOM05D004161 ORTHO05D005770 3.3e-18 94.7 80 65.0
CDE03G0096 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 7.2e-18 93.6 79 65.8
CDE04G3237 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 7.2e-18 93.6 79 65.8
AL1G36480 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 9.5e-18 93.2 72 70.8
BcaB03g14179 Brassica carinata HOM05D004161 ORTHO05D005770 9.5e-18 93.2 69 69.6
Mapoly0006s0112 Marchantia polymorpha HOM05D004161 ORTHO05D005770 9.5e-18 93.2 73 71.2
AT1G22920 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 1.2e-17 92.8 75 68.0
THA.LOC104821862 Tarenaya hassleriana HOM05D004161 ORTHO05D005770 1.6e-17 92.4 78 64.1
BraA07t29171Z Brassica rapa HOM05D004161 ORTHO05D005770 2.1e-17 92.0 69 68.1
A07p14130 Brassica napus HOM05D004161 ORTHO05D005770 3.6e-17 91.3 69 68.1
C07p20800 Brassica napus HOM05D004161 ORTHO05D005770 6.1e-17 90.5 69 68.1
BolC7t42612H Brassica oleracea HOM05D004161 ORTHO05D005770 6.1e-17 90.5 69 68.1
CARHR064530 Cardamine hirsuta HOM05D004161 ORTHO05D005770 6.1e-17 90.5 72 69.4
Thhalv10018788m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 1.0e-16 89.7 72 66.7
AT1G71230 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 1.8e-16 89.0 70 70.0
Aqoxy7G02966 Aquilegia oxysepala HOM05D004161 ORTHO05D005770 3.0e-16 88.2 74 64.9
CARHR023300 Cardamine hirsuta HOM05D004161 ORTHO05D005770 3.0e-16 88.2 79 64.6
Carub.0002s1811 Capsella rubella HOM05D004161 ORTHO05D005770 6.8e-16 87.0 73 67.1
PSO063G1389 Papaver somniferum HOM05D004161 ORTHO05D005770 1.2e-15 86.3 74 66.2
PSO170G5806 Papaver somniferum HOM05D004161 ORTHO05D005770 1.2e-15 86.3 74 66.2
BcaC06g35004 Brassica carinata HOM05D004161 ORTHO05D005770 2.0e-15 85.5 60 71.7
CSS0034864 Camellia sinensis var. sinensis HOM05D004161 ORTHO05D005770 4.4e-15 84.3 77 58.4
SMO367G0024 Selaginella moellendorffii HOM05D004161 ORTHO05D005770 4.4e-15 84.3 71 66.2
SalBow4G1531 Salvia bowleyana HOM05D004161 ORTHO05D005770 1.3e-14 82.8 77 57.1
Pp3c21_1460 Physcomitrium patens HOM05D004161 ORTHO05D005770 2.9e-14 81.6 81 55.6
AagrBONN_evm.TU.Sc2ySwM_117.740 Anthoceros agrestis HOM05D004161 ORTHO05D005770 1.8e-13 79.0 56 73.2
Pp3c18_17430 Physcomitrium patens HOM05D004161 ORTHO05D005770 4.1e-13 77.8 81 54.3
C08p21690 Brassica napus HOM05D002566 ORTHO05D002897 5.4e-13 77.4 57 73.7
Gohir.A06G106200 Gossypium hirsutum HOM05D004161 ORTHO05D005770 1.7e-11 72.4 60 71.7
Gorai.010G123100 Gossypium raimondii HOM05D004161 ORTHO05D005770 1.7e-11 72.4 60 71.7
CiPaw.08G019300 Carya illinoinensis HOM05D004161 ORTHO05D005770 2.9e-11 71.6 47 76.6
ATR1120G021 Amborella trichopoda HOM05D004161 ORTHO05D031074 5.0e-11 70.9 70 51.4
Sp5g26420 Schrenkiella parvula HOM05D004161 ORTHO05D005770 8.6e-11 70.1 43 81.4
ClCG08G012710 Citrullus lanatus HOM05D004161 ORTHO05D005770 2.5e-10 68.6 44 75.0
Hund03286 Selenicereus undatus HOM05D004161 ORTHO05D005770 2.1e-09 65.5 47 72.3


User provided reference genes

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