Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.4e-112 407.1 194 100.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 5.1e-81 304.7 194 74.2
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.3e-79 297.7 194 74.7
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 4.7e-74 281.6 179 76.0
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.5e-69 265.4 192 66.1
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.6e-66 255.4 194 64.9
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.0e-65 252.3 194 62.4
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 8.8e-65 250.8 194 60.3
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-64 250.4 194 61.9
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.2e-64 250.4 194 60.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-64 249.6 194 59.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.7e-55 219.9 194 54.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 5.4e-54 214.9 193 52.8
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 7.0e-54 214.5 194 54.6
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.0e-52 210.7 196 52.0
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 6.6e-52 208.0 194 52.6
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.6e-52 207.6 194 51.0
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.5e-51 206.8 194 50.0
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.5e-51 206.1 194 53.6
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.2e-50 203.8 194 49.5
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-50 203.8 194 52.1
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.6e-50 203.4 194 52.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.1e-50 201.4 194 52.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.8e-49 199.9 196 51.5
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.8e-49 199.9 195 51.8
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 6.8e-49 198.0 194 51.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.2e-48 197.2 195 50.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.0e-48 196.4 194 48.5
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.6e-48 196.1 194 48.5
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 2.6e-48 196.1 194 49.5
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.4e-48 195.7 194 50.5
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 4.4e-48 195.3 194 49.5
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.7e-48 194.9 194 48.5
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.7e-48 194.9 194 47.9
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 7.5e-48 194.5 194 49.0
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 9.8e-48 194.1 194 49.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 9.8e-48 194.1 194 48.5
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-47 193.4 195 49.2
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.2e-47 193.0 193 49.2
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 6.4e-47 191.4 195 45.1
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 6.4e-47 191.4 194 46.4
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.4e-47 191.4 194 47.9
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.4e-46 190.3 195 45.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.8e-46 189.9 196 46.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.4e-46 189.5 195 49.2
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.4e-46 189.5 195 49.2
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 3.2e-46 189.1 192 47.9
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 5.4e-46 188.3 193 47.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.0e-46 188.0 195 45.1
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.0e-46 188.0 195 45.1
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 7.0e-46 188.0 194 46.9
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.2e-45 187.2 194 46.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.6e-45 186.8 196 47.4
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.6e-45 186.8 194 47.4
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.5e-45 185.7 194 44.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 4.6e-45 185.3 196 46.4
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.6e-45 185.3 195 48.2
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.0e-44 184.1 190 44.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.0e-44 184.1 194 46.9
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.3e-44 183.7 194 47.9
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.7e-44 183.3 195 47.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.7e-44 183.3 195 48.2
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.0e-44 182.6 188 45.2
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 3.9e-44 182.2 192 45.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 5.0e-44 181.8 192 43.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.6e-44 181.0 188 48.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.1e-43 180.6 184 47.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.1e-43 180.6 192 45.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.9e-43 179.9 194 46.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.3e-43 179.1 187 46.5
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 4.3e-43 178.7 192 44.8
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 9.5e-43 177.6 190 45.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.2e-42 177.2 191 44.5
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.2e-42 177.2 189 43.9
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.6e-42 176.8 190 45.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-41 173.7 191 47.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.8e-41 173.3 194 42.3
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.8e-41 173.3 188 45.2
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.3e-41 172.9 194 41.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-41 172.2 194 41.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-41 172.2 194 41.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-41 172.2 194 41.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 6.8e-41 171.4 195 42.6
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 6.8e-41 171.4 194 41.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.6e-40 169.5 196 43.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 5.8e-40 168.3 188 47.3
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.7e-39 166.8 191 42.4
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.7e-39 166.8 194 44.3
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 4.9e-39 165.2 164 51.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.4e-39 164.9 197 43.1
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.1e-38 164.1 191 39.8
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.9e-38 163.3 154 50.0
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.4e-38 162.9 187 42.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.2e-38 162.5 187 43.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.1e-38 162.2 196 44.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.0e-38 161.4 188 41.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.2e-37 160.6 195 41.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.0e-37 159.8 195 39.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.0e-37 159.8 194 40.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.7e-37 159.5 196 39.8
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 4.6e-37 158.7 194 40.7
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 6.0e-37 158.3 196 38.3
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 6.0e-37 158.3 196 38.3
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 6.0e-37 158.3 196 38.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.0e-36 157.5 196 38.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.0e-36 157.5 196 38.3
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.7e-36 156.8 191 39.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.7e-36 156.8 154 47.4
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.3e-36 156.4 181 42.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.3e-36 156.4 193 38.9
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.9e-36 155.6 196 40.3
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.0e-36 155.2 188 43.1
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.9e-35 153.3 194 40.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.5e-35 152.9 196 41.3
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.5e-35 152.9 171 46.8
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 4.3e-35 152.1 196 38.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 4.3e-35 152.1 190 40.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 5.6e-35 151.8 152 46.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.3e-35 151.4 190 38.9
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 9.5e-35 151.0 181 42.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 6.2e-34 148.3 179 42.5
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 8.1e-34 147.9 202 39.6
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.1e-33 147.5 154 45.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.1e-33 146.0 194 36.6
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 5.2e-33 145.2 147 44.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.6e-32 142.9 167 46.1
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.6e-32 142.9 194 36.1
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.4e-32 142.5 191 37.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.4e-32 142.5 194 36.1
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.8e-32 141.7 165 42.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.5e-32 141.4 165 45.5
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.3e-31 140.6 177 41.2
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.9e-31 138.7 195 39.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.4e-31 138.3 196 40.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 6.4e-31 138.3 193 36.8
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 8.3e-31 137.9 177 40.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.1e-29 133.3 146 44.5
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 3.5e-29 132.5 198 36.9
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 7.8e-29 131.3 200 39.0
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 7.8e-29 131.3 200 39.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.0e-28 129.4 195 34.9
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.1e-28 128.6 148 42.6
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 5.1e-28 128.6 194 36.6
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 6.6e-28 128.3 183 35.5
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-27 127.5 121 49.6
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-27 127.5 139 43.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.3e-27 125.9 176 36.9
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.6e-27 125.2 145 42.1
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.6e-26 123.6 117 47.9
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-25 119.8 190 32.1
Medtr7g109760 Medicago truncatula HOM05D003762 ORTHO05D004374 6.8e-25 118.2 112 58.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.4e-24 115.9 191 31.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 3.8e-23 112.5 191 30.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.4e-22 109.8 195 33.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-21 107.5 124 44.4
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.8e-21 104.8 173 36.4
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 5.6e-19 98.6 205 31.2
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 9.6e-19 97.8 194 32.0
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 3.6e-18 95.9 189 28.6
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.4e-17 93.2 108 41.7
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.1e-17 92.8 130 39.2
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 6.9e-17 91.7 88 50.0
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.6e-16 88.2 112 42.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-14 83.2 100 42.0
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-14 83.2 100 42.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.1e-13 80.1 78 48.7
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.7e-13 79.7 92 40.2
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.7e-13 79.7 86 45.3
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 4.6e-13 79.0 80 43.8
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.0e-13 78.6 93 43.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 6.6e-12 75.1 75 49.3
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.3e-11 72.4 105 38.1
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 4.8e-10 68.9 80 41.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.1e-09 67.8 89 42.7
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.1e-09 66.2 77 44.2
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 9.9e-08 61.2 120 33.3
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.9e-07 58.9 93 36.6
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.1e-06 57.8 49 46.9
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.2e-06 56.2 78 34.6


User provided reference genes

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