Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 3616.2 1884 100.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 3449.4 1884 94.9
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 3395.1 1892 93.0
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 3338.1 1892 91.6
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 3210.6 1891 87.4
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 3184.4 1892 86.9
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 3103.9 1894 84.9
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 3080.4 1903 84.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2872.0 2325 68.0
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2798.1 1891 76.1
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2788.8 1891 75.3
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2781.9 1891 75.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2754.5 1893 74.5
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2748.0 1894 74.5
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2737.2 1894 74.0
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2717.2 1893 73.0
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2707.9 1892 73.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2703.3 1894 73.5
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2697.2 1892 72.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2697.2 1892 72.8
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2689.4 1890 72.9
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2689.1 1924 72.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2685.2 1893 73.1
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2676.0 1892 72.5
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2662.9 1919 71.8
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2655.2 1907 72.2
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2650.2 1910 72.8
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2645.5 1890 72.1
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2641.7 1892 71.8
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2637.4 1895 71.2
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2610.5 1898 71.2
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2609.3 1955 69.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2590.8 2024 68.1
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2590.1 1890 70.4
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2580.4 1896 71.4
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2565.0 1891 69.0
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2556.6 1895 69.4
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2550.4 1892 69.7
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2545.4 1892 69.7
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2540.0 1717 76.1
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2540.0 1892 68.3
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2538.5 1895 69.1
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2535.8 1884 69.4
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2531.1 1887 68.5
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2526.9 1892 68.7
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2513.8 1883 68.8
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2503.4 1892 68.1
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2501.1 1894 67.6
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2477.6 1898 68.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2466.4 1902 67.7
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2459.9 1902 67.6
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2452.2 1897 67.7
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2447.2 1892 67.9
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2445.2 1897 66.3
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2442.9 1962 66.1
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2440.6 1906 67.0
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2439.5 1892 66.7
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2438.7 1895 66.3
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2437.9 1896 66.7
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2437.9 1896 66.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2430.6 1896 66.7
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2412.5 1954 64.6
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2399.4 1636 74.8
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2399.0 1886 66.1
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2380.9 1933 64.6
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2376.7 2024 62.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2369.0 1899 65.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2369.0 1894 64.9
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2366.7 1899 65.0
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2364.0 1888 65.8
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2362.0 1900 64.9
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2360.9 1883 65.4
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2311.6 1591 74.4
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2307.7 1888 64.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2277.7 1935 63.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2275.7 1898 62.7
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 2208.7 1467 78.7
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2154.8 1478 74.9
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2137.1 1511 73.5
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1934.5 1585 63.1
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1867.4 1431 67.7
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1774.2 1191 75.1
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1734.9 1926 49.3
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1699.1 1910 48.6
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1655.2 1432 61.9
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1624.0 1916 47.6
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1620.9 1451 58.4
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1552.3 1927 45.1
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1544.3 1891 50.0
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1533.1 952 83.5
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1474.5 1215 62.5
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1430.2 840 85.8
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1350.9 1246 56.9
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1292.7 1933 40.2
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1199.5 1128 58.1
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1113.2 1642 43.8
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.4e-311 1071.6 1259 49.0
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.4e-294 1016.1 780 66.3
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 5.7e-294 1015.4 1642 41.1
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 1.1e-271 941.4 783 60.4
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.7e-259 900.2 771 59.7
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 3.7e-240 836.6 702 64.2
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.1e-239 833.6 694 63.8
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 4.3e-225 786.6 1056 46.0
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 3.7e-208 730.3 1045 42.2
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.5e-206 724.9 609 64.4
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.5e-204 716.5 1040 40.9
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.2e-197 694.5 702 52.7
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.5e-196 691.8 522 69.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.8e-178 631.7 514 65.2
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.9e-159 568.5 511 61.8
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.5e-148 532.3 424 69.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 4.2e-127 461.1 400 58.2
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.5e-124 451.8 266 89.5
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.6e-121 441.8 415 63.1
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.2e-119 434.9 352 67.9
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 3.3e-116 424.9 299 72.2
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.0e-96 360.1 230 80.4
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.4e-93 349.7 353 58.9
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 3.3e-92 345.1 329 56.8
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.7e-91 341.7 214 79.9
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.7e-88 332.8 278 61.9
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 3.2e-87 328.6 328 55.8
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.8e-83 315.5 347 50.4
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 2.4e-82 312.4 334 56.0
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.7e-75 289.7 300 54.0
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 6.3e-67 261.2 176 76.7
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 6.4e-59 234.6 331 45.3
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-58 233.8 205 59.5
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 8.6e-56 224.2 211 61.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 6.2e-54 218.0 227 53.3
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 6.2e-54 218.0 227 53.3
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 4.4e-52 211.8 298 44.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 5.8e-52 211.5 386 39.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.9e-51 208.4 197 56.3
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 6.0e-49 201.4 216 53.7
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 6.0e-49 201.4 1742 22.1
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-47 195.3 400 37.5
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 7.3e-47 194.5 151 76.8
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-45 190.7 126 84.1
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.3e-43 183.7 153 66.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.5e-39 169.5 162 59.3
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 4.7e-38 165.2 135 71.9
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.1e-33 149.8 769 23.8
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 3.9e-32 145.6 326 31.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.9e-32 145.6 124 55.6
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 1.2e-30 140.6 985 23.9
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 4.7e-30 138.7 85 76.5
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 4.0e-29 135.6 117 60.7
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.4e-28 132.5 171 49.7
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 3.4e-28 132.5 75 86.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-25 124.0 97 64.9
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 8.7e-24 117.9 151 48.3
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.6e-22 113.6 78 69.2
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.8e-22 112.8 254 34.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 4.8e-22 112.1 101 60.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.4e-21 109.8 105 49.5
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-19 103.2 81 66.7
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.2e-18 99.0 55 85.5
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 5.4e-18 98.6 56 87.5
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 6.0e-17 95.1 99 48.5
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 7.9e-17 94.7 99 48.5
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-13 84.3 80 53.8
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 1.3e-11 77.4 63 69.8
Medtr6g086755 Medicago truncatula HOM05D003776 ORTHO05D004459 1.7e-11 77.0 59 79.7
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.4e-10 73.9 37 89.2
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 4.2e-10 72.4 44 75.0
Psat6g208560 Pisum sativum HOM05D003776 ORTHO05D004459 7.1e-10 71.6 59 83.1
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.2e-09 70.9 64 48.4
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.7e-09 69.7 66 57.6
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 7.9e-09 68.2 78 56.4
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.9e-08 65.9 43 65.1
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 6.7e-08 65.1 93 46.2
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 6.7e-08 65.1 34 85.3
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-07 64.3 41 75.6
Psat7g264120 Pisum sativum HOM05D003776 ORTHO05D023078 1.3e-06 60.8 31 100.0
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 1.6e-06 60.5 47 59.6
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.6e-06 60.5 44 63.6
Psat6g208520 Pisum sativum HOM05D003776 ORTHO05D004459 4.8e-06 58.9 63 71.4


User provided reference genes

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