Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 3.1e-190 668.3 343 100.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 5.5e-179 630.9 343 93.9
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 1.2e-173 613.2 343 91.0
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 8.9e-169 597.0 384 83.3
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 1.0e-164 583.6 343 86.9
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.8e-161 572.8 346 86.4
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.8e-161 572.8 347 85.3
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.1e-161 572.0 344 84.9
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 2.6e-160 568.9 345 85.2
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 5.4e-158 561.2 365 80.3
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 2.1e-157 559.3 345 83.8
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.1e-155 553.5 350 82.0
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.5e-155 552.4 353 80.2
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 3.3e-155 552.0 346 81.5
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.3e-155 552.0 345 81.7
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.2e-154 550.1 342 81.6
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.1e-154 549.3 350 81.1
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.8e-153 546.2 343 80.8
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 3.1e-153 545.4 343 80.8
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.1e-153 545.4 343 81.0
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 4.0e-153 545.0 343 81.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.2e-152 543.5 348 80.2
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.4e-152 542.0 343 80.5
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 9.9e-152 540.4 343 80.5
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.7e-151 539.7 339 81.7
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.7e-151 539.7 349 79.9
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.9e-151 538.1 343 79.9
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.9e-151 538.1 343 79.9
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 6.4e-151 537.7 353 79.3
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 8.3e-151 537.3 343 79.6
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 7.1e-150 534.3 344 79.9
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 7.1e-150 534.3 346 79.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 9.2e-150 533.9 349 78.5
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 9.2e-150 533.9 344 79.9
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 9.2e-150 533.9 346 80.1
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.2e-149 533.5 343 79.0
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.1e-149 532.7 343 79.9
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 2.7e-149 532.3 349 78.5
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 2.7e-149 532.3 323 83.3
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 3.5e-149 531.9 351 78.1
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 3.5e-149 531.9 343 79.3
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 4.6e-149 531.6 371 74.9
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 4.6e-149 531.6 345 78.6
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 7.8e-149 530.8 345 78.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 2.3e-148 529.3 363 76.0
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.3e-148 529.3 347 78.4
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 3.9e-148 528.5 343 79.0
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.5e-147 526.6 343 79.0
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.9e-147 526.2 343 79.0
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.5e-147 525.8 346 77.7
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 3.3e-147 525.4 346 77.7
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 5.6e-147 524.6 350 76.9
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 7.3e-147 524.2 346 77.5
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 7.3e-147 524.2 347 78.4
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 9.5e-147 523.9 343 77.8
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 1.2e-146 523.5 351 78.9
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.2e-146 523.5 326 81.0
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 6.2e-146 521.2 355 75.8
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 8.1e-146 520.8 355 75.2
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-145 520.4 343 76.7
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-145 520.4 343 76.7
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.1e-145 520.4 343 76.7
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.4e-145 520.0 353 75.9
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.8e-145 519.6 347 77.5
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.4e-145 519.2 344 77.0
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.4e-145 519.2 346 76.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.4e-145 519.2 343 77.6
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 3.1e-145 518.8 349 76.5
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 3.1e-145 518.8 343 76.4
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 4.0e-145 518.5 355 75.5
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.0e-145 518.5 347 77.8
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 4.0e-145 518.5 344 77.9
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 8.9e-145 517.3 343 77.6
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 8.9e-145 517.3 343 78.1
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.2e-144 516.9 347 77.2
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.2e-144 516.9 347 77.2
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 3.4e-144 515.4 343 77.8
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 4.4e-144 515.0 346 75.4
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 4.4e-144 515.0 343 76.7
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 4.4e-144 515.0 343 76.7
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 9.9e-144 513.8 344 76.7
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 9.9e-144 513.8 343 76.1
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-143 513.5 348 75.3
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-143 513.5 348 75.3
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.3e-143 513.5 347 75.5
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 1.3e-143 513.5 348 74.4
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 1.3e-143 513.5 351 76.1
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.7e-143 513.1 323 80.5
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 2.2e-143 512.7 323 79.6
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.2e-143 512.7 348 74.7
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 2.9e-143 512.3 343 75.5
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.9e-143 512.3 348 75.3
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 2.9e-143 512.3 343 77.6
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 3.8e-143 511.9 355 74.4
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 3.8e-143 511.9 346 76.0
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 4.9e-143 511.5 350 76.6
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 1.1e-142 510.4 318 81.1
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.1e-142 510.4 348 73.3
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.1e-142 510.4 344 75.9
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 9.2e-142 507.3 355 74.1
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 9.2e-142 507.3 348 73.0
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.6e-141 506.5 330 78.5
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 2.1e-141 506.1 348 72.7
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.7e-140 503.1 341 74.8
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 3.0e-140 502.3 337 75.7
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 5.1e-140 501.5 323 77.1
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.5e-139 500.0 343 74.9
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.2e-138 496.9 334 74.9
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 6.9e-137 491.1 332 77.1
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.2e-134 482.3 347 73.8
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 3.2e-134 482.3 344 70.9
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 6.0e-133 478.0 343 71.1
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.3e-132 476.1 344 70.6
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 4.3e-131 471.9 323 74.9
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.0e-129 464.2 344 71.8
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 2.6e-128 462.6 347 70.0
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 2.6e-128 462.6 347 70.0
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.6e-128 462.6 333 67.9
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.3e-127 460.3 347 68.3
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.2e-127 459.5 347 68.0
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 9.3e-126 454.1 348 66.7
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 7.9e-125 451.1 342 69.6
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 5.1e-124 448.4 343 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.7e-124 447.6 331 66.5
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.7e-124 447.6 315 69.2
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 4.0e-121 438.7 318 67.6
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 9.9e-120 434.1 344 68.0
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.9e-119 432.6 344 68.6
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.5e-118 429.5 281 74.4
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 5.1e-116 421.8 278 75.5
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 5.1e-116 421.8 278 75.5
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-115 420.6 323 66.9
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.6e-114 416.8 344 64.8
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.7e-111 406.8 318 62.9
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 2.7e-109 399.4 327 60.9
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.0e-108 397.5 322 62.4
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.3e-108 396.4 276 74.3
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 8.8e-100 367.9 231 79.2
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 3.4e-96 355.9 255 71.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.4e-92 344.0 229 73.4
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 5.1e-92 342.0 199 82.4
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.4e-83 311.6 298 56.0
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 5.2e-76 288.9 215 68.4
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.4e-73 280.0 246 62.6
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.6e-64 250.8 185 64.3
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.6e-64 250.8 185 64.3
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.0e-60 236.5 165 68.5
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.6e-56 224.2 131 81.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.5e-54 217.6 123 86.2
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.8e-52 210.7 140 73.6
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.8e-51 205.7 122 77.9
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 7.3e-46 188.7 164 60.4
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.2e-45 188.0 164 61.0
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.6e-45 187.6 112 83.0
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.2e-43 181.4 164 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.0e-35 154.1 127 59.8
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 5.2e-28 129.4 118 63.6
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 6.4e-26 122.5 92 71.7
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 2.4e-25 120.6 70 81.4
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 5.1e-23 112.8 90 67.8
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 6.6e-23 112.5 78 73.1
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 8.7e-23 112.1 163 44.2
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 2.1e-16 90.9 69 66.7
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.3e-15 87.4 118 44.1
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 3.9e-15 86.7 78 56.4
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 9.9e-11 72.0 138 40.6
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 1.7e-10 71.2 66 62.1
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 1.9e-06 57.8 40 57.5


User provided reference genes

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