Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g067440 Medicago truncatula HOM05D001971 ORTHO05D263473 5.5e-59 230.7 112 100.0
Ca_24521_v3 Cicer arietinum L. HOM05D001971 ORTHO05D003057 3.7e-07 58.5 69 53.6
Medtr5g009520 Medicago truncatula HOM05D001971 ORTHO05D003057 3.7e-07 58.5 69 53.6
TPR.G6708 Trifolium pratense HOM05D001971 ORTHO05D003057 3.7e-07 58.5 69 53.6
arahy.Tifrunner.gnm1.ann1.BY6BY7 Arachis hypogaea HOM05D001971 ORTHO05D003057 8.3e-07 57.4 69 53.6
LjContig00310g0016293 Lotus japonicus HOM05D001971 ORTHO05D003057 1.1e-06 57.0 83 45.8
Ciclev10019082m.g Citrus clementina HOM05D001971 ORTHO05D003057 1.4e-06 56.6 69 52.2
Haze_08669 Corylus avellana HOM05D001971 ORTHO05D003057 1.4e-06 56.6 69 52.2
Eucgr.D01708 Eucalyptus grandis HOM05D001971 ORTHO05D003057 1.4e-06 56.6 69 52.2
arahy.Tifrunner.gnm1.ann1.H82VQF Arachis hypogaea HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
arahy.Tifrunner.gnm1.ann1.NMF6QG Arachis hypogaea HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
CAN.G2065.4 Capsicum annuum HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Cpa.g.sc122.38 Carica papaya HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Dinv38858 Davidia involucrata HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Lalb_Chr09g0320691 Lupinus albus HOM05D001971 ORTHO05D003057 1.8e-06 56.2 83 45.8
Manes.02G012700 Manihot esculenta HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Manes.02G012800 Manihot esculenta HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Nitab4.5_0002788g0010 Nicotiana tabacum HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Nitab4.5_0005112g0040 Nicotiana tabacum HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Sabra01G0070400 Salix brachista HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 50.7
Solyc03g007850.1 Solanum lycopersicum HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Solyc12g056080.2 Solanum lycopersicum HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Sopen03g003520 Solanum pennellii HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Sopen03g003780 Solanum pennellii HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Sopen03g003790 Solanum pennellii HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
Sopen12g028590 Solanum pennellii HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
PGSC0003DMG400005011 Solanum tuberosum HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
VMungo1215G1555 Vigna mungo HOM05D001971 ORTHO05D003057 1.8e-06 56.2 69 52.2
arahy.Tifrunner.gnm1.ann1.99FJVY Arachis hypogaea HOM05D001971 ORTHO05D003057 2.4e-06 55.8 69 52.2
arahy.Tifrunner.gnm1.ann1.J8J1D7 Arachis hypogaea HOM05D001971 ORTHO05D003057 2.4e-06 55.8 69 50.7
arahy.Tifrunner.gnm1.ann1.ZZ2GRA Arachis hypogaea HOM05D001971 ORTHO05D003057 2.4e-06 55.8 69 52.2
Ca_09750_v3 Cicer arietinum L. HOM05D001971 ORTHO05D003057 2.4e-06 55.8 69 52.2
Psat2g047000 Pisum sativum HOM05D001971 ORTHO05D003057 2.4e-06 55.8 69 52.2
PGSC0003DMG400028270 Solanum tuberosum HOM05D001971 ORTHO05D003057 2.4e-06 55.8 69 50.7
Solyc03g007560.2 Solanum lycopersicum HOM05D001971 ORTHO05D003057 3.1e-06 55.5 71 50.7
Zm00001eb051990 Zea mays HOM05D001971 ORTHO05D003057 3.1e-06 55.5 69 50.7
Aa31LG9G350 Aethionema arabicum HOM05D001971 ORTHO05D003057 4.1e-06 55.1 69 50.7
CARHR212800 Cardamine hirsuta HOM05D001971 ORTHO05D003057 4.1e-06 55.1 69 50.7
Os06g0523900 Oryza sativa ssp. japonica HOM05D001971 ORTHO05D003057 4.1e-06 55.1 69 49.3
Potri.001G094400 Populus trichocarpa HOM05D001971 ORTHO05D003057 4.1e-06 55.1 69 50.7
AT5G41770 Arabidopsis thaliana HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 49.3
CSS0015615 Camellia sinensis var. sinensis HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 50.7
CSS0019382 Camellia sinensis var. sinensis HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 50.7
CiPaw.07G046600 Carya illinoinensis HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 50.7
DCAR_027721 Daucus carota HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 49.3
Nitab4.5_0000263g0140 Nicotiana tabacum HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 50.7
PGR119G1074 Punica granatum HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 50.7
TPR.G1282 Trifolium pratense HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 49.3
TWI60G1540 Tripterygium wilfordii HOM05D001971 ORTHO05D003057 5.4e-06 54.7 69 49.3
BcaB06g27667 Brassica carinata HOM05D001971 ORTHO05D003057 7.0e-06 54.3 69 47.8
Duzib084G0522 Durio zibethinus HOM05D001971 ORTHO05D003057 7.0e-06 54.3 69 50.7
Glyma.01G224300 Glycine max HOM05D001971 ORTHO05D003057 7.0e-06 54.3 69 50.7
Glyma.11G018600 Glycine max HOM05D001971 ORTHO05D003057 7.0e-06 54.3 69 50.7
Gohir.D03G098750 Gossypium hirsutum HOM05D001971 ORTHO05D003057 7.0e-06 54.3 75 48.0
Phvul.002G162900 Phaseolus vulgaris HOM05D001971 ORTHO05D003057 7.0e-06 54.3 69 50.7
CAN.G1057.10 Capsicum annuum HOM05D001971 ORTHO05D003057 9.1e-06 53.9 69 50.7
Medtr6g090890 Medicago truncatula HOM05D001971 ORTHO05D003057 9.1e-06 53.9 68 52.9
Sp7g00320 Schrenkiella parvula HOM05D001971 ORTHO05D003057 9.1e-06 53.9 69 47.8
TWI15G0909 Tripterygium wilfordii HOM05D001971 ORTHO05D003057 9.1e-06 53.9 69 49.3


User provided reference genes

Program Settings