Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 0.0e+00 1146.7 582 100.0
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 7.8e-242 840.5 587 77.0
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 1.8e-206 723.0 543 71.3
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 5.5e-203 711.4 592 66.9
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 1.2e-194 683.7 578 64.7
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 2.7e-194 682.6 602 62.5
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 1.7e-180 636.7 603 57.9
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 2.2e-175 619.8 586 59.9
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 7.0e-174 614.8 584 59.4
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 4.2e-171 605.5 657 52.7
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 5.8e-128 462.2 358 72.9
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 8.7e-116 421.8 621 43.2
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 2.1e-93 347.4 619 38.4
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 2.1e-93 347.4 629 36.9
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 2.7e-93 347.1 628 37.9
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 3.9e-92 343.2 640 38.1
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 3.7e-90 336.7 633 38.1
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 4.8e-90 336.3 655 36.8
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 6.3e-90 335.9 648 36.3
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 5.0e-87 326.2 632 37.2
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 5.0e-87 326.2 666 36.0
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 2.5e-86 323.9 625 36.8
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 6.7e-84 315.8 606 38.0
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.1e-83 315.1 606 38.0
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.5e-83 314.7 593 38.4
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 1.9e-83 314.3 627 38.4
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 2.5e-83 313.9 629 36.4
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 2.2e-82 310.8 639 35.1
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.5e-80 304.7 626 35.5
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 3.4e-72 276.9 504 35.7
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 3.4e-72 276.9 593 34.6
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.6e-69 266.9 634 33.3
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 3.6e-69 266.9 618 36.2
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 8.0e-69 265.8 334 44.0
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 5.2e-68 263.1 335 45.4
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 8.8e-68 262.3 584 34.4
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 2.6e-67 260.8 644 33.9
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 3.1e-65 253.8 589 31.9
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 1.2e-64 251.9 640 31.2
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 2.2e-63 247.7 640 29.1
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 5.0e-63 246.5 634 31.4
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 5.0e-63 246.5 596 33.1
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 8.5e-63 245.7 685 30.4
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 4.0e-60 236.9 215 54.9
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 7.0e-57 226.1 594 29.8
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 4.5e-56 223.4 336 38.4
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 7.7e-56 222.6 607 29.0
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 1.0e-55 222.2 591 28.8
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 1.0e-55 222.2 221 50.7
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 6.5e-55 219.5 493 32.3
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 8.5e-55 219.2 314 39.5
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 7.2e-54 216.1 629 29.1
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 3.6e-53 213.8 584 28.8
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 1.0e-52 212.2 534 30.3
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 4.0e-52 210.3 598 30.4
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 5.2e-52 209.9 114 89.5
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 5.2e-52 209.9 122 80.3
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 8.8e-52 209.1 600 28.8
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 6.3e-50 203.0 593 28.3
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 6.3e-50 203.0 418 34.7
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.4e-49 201.8 385 34.5
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 7.0e-49 199.5 216 47.7
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 1.2e-48 198.7 320 38.1
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.0e-47 195.7 244 46.3
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.7e-47 194.9 236 46.6
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 6.5e-47 193.0 238 46.2
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 4.2e-46 190.3 223 47.1
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 7.2e-46 189.5 223 48.0
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 2.6e-43 181.0 520 30.6
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.8e-42 177.6 568 27.5
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 4.3e-38 163.7 239 39.3
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 7.3e-38 162.9 243 38.7
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.2e-37 162.2 599 26.2
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.1e-37 161.4 252 36.9
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 3.6e-37 160.6 597 25.6
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 3.0e-36 157.5 247 38.5
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 7.3e-30 136.3 412 29.1
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 3.6e-29 134.0 154 41.6
Medtr8g062580 Medicago truncatula HOM05D000152 ORTHO05D001356 6.8e-20 103.2 61 86.9
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 3.6e-13 80.9 336 28.9
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 8.9e-12 76.3 246 32.5
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 3.4e-11 74.3 124 30.6
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 2.7e-08 64.7 190 32.1


User provided reference genes

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