Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 9.1e-71 270.0 126 100.0
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 2.7e-62 241.9 120 95.8
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 1.0e-61 240.0 120 95.0
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 8.1e-19 97.4 81 56.8
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 8.1e-19 97.4 78 57.7
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 1.4e-18 96.7 82 57.3
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.8e-18 96.3 78 59.0
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.2e-17 93.6 70 62.9
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.5e-17 93.2 78 57.7
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 2.6e-17 92.4 93 53.8
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 3.4e-17 92.0 78 55.1
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 9.9e-17 90.5 76 56.6
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 4.9e-16 88.2 78 53.8
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 8.4e-16 87.4 81 51.9
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 8.4e-16 87.4 81 51.9
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 8.4e-16 87.4 81 51.9
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.9e-15 86.3 90 48.9
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.4e-15 85.9 81 51.9
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 2.4e-15 85.9 90 47.8
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 2.4e-15 85.9 78 52.6
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 2.4e-15 85.9 94 45.7
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 9.3e-15 84.0 82 47.6
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 9.3e-15 84.0 81 50.6
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 9.3e-15 84.0 78 51.3
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 2.7e-14 82.4 81 50.6
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 1.0e-13 80.5 81 49.4
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.0e-13 80.5 81 49.4
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.7e-13 79.7 65 55.4
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 3.0e-13 79.0 70 54.3
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 3.9e-13 78.6 70 54.3
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 3.9e-13 78.6 70 51.4
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 6.6e-13 77.8 78 46.2
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 6.6e-13 77.8 94 42.6
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.6e-13 77.8 96 44.8
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.6e-13 77.8 96 44.8
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 6.6e-13 77.8 68 52.9
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 8.7e-13 77.4 91 44.0
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 8.7e-13 77.4 70 51.4
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.1e-12 77.0 71 50.7
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.5e-12 76.6 70 54.3
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-12 76.6 93 41.9
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.9e-12 76.3 93 41.9
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.5e-12 75.9 70 51.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 3.3e-12 75.5 68 54.4
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.3e-12 75.5 91 41.8
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 4.3e-12 75.1 93 40.9
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 4.3e-12 75.1 81 49.4
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 7.4e-12 74.3 91 46.2
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 9.6e-12 73.9 68 51.5
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 9.6e-12 73.9 81 44.4
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.6e-11 73.2 91 46.2
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.6e-11 73.2 93 40.9
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-11 73.2 93 40.9
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-11 73.2 70 48.6
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.6e-11 73.2 82 43.9
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 1.6e-11 73.2 68 54.4
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 2.1e-11 72.8 70 48.6
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 2.1e-11 72.8 81 45.7
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 3.6e-11 72.0 70 48.6
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 4.8e-11 71.6 70 47.1
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 4.8e-11 71.6 81 42.0
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 8.1e-11 70.9 78 46.2
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.1e-11 70.9 61 50.8
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 8.1e-11 70.9 84 41.7
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.1e-10 70.5 78 44.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 1.1e-10 70.5 71 50.7
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.1e-10 70.5 70 48.6
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.1e-10 70.5 70 48.6
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.1e-10 70.5 70 48.6
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.1e-10 70.5 102 36.3
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-10 70.5 70 48.6
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.1e-10 70.5 81 45.7
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.1e-10 70.5 81 45.7
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.4e-10 70.1 67 47.8
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.8e-10 69.7 68 52.9
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 2.4e-10 69.3 64 50.0
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 4.0e-10 68.6 77 45.5
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 5.3e-10 68.2 78 42.3
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 5.3e-10 68.2 78 41.0
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 5.3e-10 68.2 70 48.6
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 6.9e-10 67.8 78 43.6
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 6.9e-10 67.8 64 45.3
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 9.0e-10 67.4 70 47.1
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 9.0e-10 67.4 78 42.3
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 1.5e-09 66.6 69 47.8
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.5e-09 66.6 71 47.9
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.0e-09 66.2 102 35.3
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.0e-09 66.2 68 45.6
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.6e-09 65.9 70 47.1
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.6e-09 65.9 71 47.9
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.4e-09 65.5 95 35.8
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.5e-09 65.1 66 50.0
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 4.5e-09 65.1 67 47.8
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 5.8e-09 64.7 64 48.4
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 7.6e-09 64.3 66 48.5
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 7.6e-09 64.3 71 46.5
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 9.9e-09 63.9 102 35.3
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.7e-08 63.2 70 45.7
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 1.7e-08 63.2 67 46.3
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.8e-08 62.0 102 34.3
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-08 62.0 69 47.8
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 4.9e-08 61.6 102 33.3
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 6.4e-08 61.2 70 44.3
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 8.4e-08 60.8 89 37.1
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 8.4e-08 60.8 68 47.1
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 4.2e-07 58.5 78 38.5
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 5.5e-07 58.2 77 40.3
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 5.5e-07 58.2 70 40.0
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 7.1e-07 57.8 65 44.6
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 9.3e-07 57.4 90 36.7
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-06 57.0 109 33.0
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.2e-06 57.0 109 33.0
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 4.6e-06 55.1 72 40.3


User provided reference genes

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