Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 6.9e-213 743.8 401 100.0
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.4e-189 666.4 404 89.4
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.7e-169 598.2 404 81.2
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 6.1e-169 597.8 404 81.7
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 4.8e-166 588.2 404 80.2
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.8e-166 588.2 406 81.3
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-165 587.0 404 80.2
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-165 585.5 404 80.0
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 3.6e-161 572.0 405 79.5
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.8e-160 569.7 405 79.3
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.3e-160 569.3 405 79.3
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 9.7e-159 563.9 405 78.3
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 5.3e-157 558.1 422 74.6
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 8.8e-152 540.8 406 77.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 7.5e-151 537.7 403 75.9
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.5e-146 523.5 403 74.4
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 3.2e-146 522.3 403 74.9
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 6.1e-145 518.1 404 72.3
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 2.3e-144 516.2 401 74.8
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 9.8e-143 510.8 401 73.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.0e-139 500.7 409 69.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.4e-135 485.7 329 78.7
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 7.5e-135 484.6 409 69.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.0e-131 474.2 420 67.4
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 3.3e-130 469.2 425 66.1
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.3e-130 468.8 409 66.5
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 9.5e-130 467.6 410 68.3
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.6e-129 465.7 425 66.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 6.8e-128 461.5 408 69.1
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 6.8e-128 461.5 409 68.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 8.9e-128 461.1 409 68.0
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.6e-127 459.5 403 66.5
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 4.4e-127 458.8 415 66.0
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-126 456.8 404 66.3
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 8.3e-126 454.5 346 75.1
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.1e-125 454.1 410 66.1
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.1e-125 452.2 407 67.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.6e-124 450.3 317 79.8
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 6.0e-124 448.4 423 64.5
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 6.0e-124 448.4 416 65.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 6.0e-124 448.4 426 64.8
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 6.0e-124 448.4 413 64.2
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 5.0e-123 445.3 410 64.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.1e-122 444.1 408 65.4
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.3e-122 442.2 414 64.3
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 9.5e-122 441.0 434 61.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 8.1e-121 438.0 363 69.1
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 8.9e-120 434.5 407 62.2
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.6e-119 433.0 413 65.6
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 5.8e-119 431.8 410 65.4
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.9e-118 429.5 406 62.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.4e-117 426.4 410 63.4
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.2e-117 426.0 355 69.9
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.1e-117 425.6 407 63.1
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 9.2e-117 424.5 403 63.3
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.6e-116 423.7 433 60.3
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.7e-116 422.9 412 62.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 3.5e-116 422.5 410 62.9
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.5e-116 422.5 409 64.5
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.6e-116 422.2 409 64.3
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.3e-115 420.6 411 64.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.3e-115 420.6 355 69.6
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.7e-115 420.2 415 63.1
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 6.6e-115 418.3 355 69.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.5e-114 417.2 442 60.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.3e-114 415.6 409 63.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.3e-114 415.6 409 63.6
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.1e-113 413.3 408 62.0
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 3.6e-113 412.5 411 61.1
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 4.7e-113 412.1 408 62.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 4.7e-113 412.1 408 62.5
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.4e-112 410.6 406 63.1
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.4e-112 410.6 404 61.6
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 5.2e-112 408.7 412 60.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.2e-112 408.7 407 63.4
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.8e-112 408.3 409 61.4
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-111 407.5 405 61.2
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.6e-111 406.4 404 61.1
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.4e-111 405.6 408 61.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.6e-111 404.8 404 61.1
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 7.6e-111 404.8 423 59.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 9.9e-111 404.4 412 61.4
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.7e-110 403.7 435 59.3
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.7e-110 403.7 421 58.9
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 3.8e-110 402.5 411 60.3
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.9e-110 402.1 402 60.7
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.4e-110 401.7 410 61.5
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-109 400.6 406 60.3
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.9e-109 400.2 428 58.9
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.1e-109 399.1 411 60.8
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 5.4e-109 398.7 342 69.6
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.7e-108 396.4 433 58.7
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.5e-108 396.0 429 57.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.6e-108 395.6 400 60.2
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 4.6e-108 395.6 407 60.0
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.3e-107 393.3 435 56.3
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.0e-107 392.9 409 61.1
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.9e-107 392.5 413 58.8
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 6.6e-107 391.7 411 59.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.5e-106 389.8 435 57.9
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.5e-106 389.8 413 60.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 3.6e-105 386.0 409 59.2
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 4.7e-105 385.6 424 57.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 4.7e-105 385.6 438 57.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 6.2e-105 385.2 409 60.4
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 8.1e-105 384.8 427 57.6
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 8.1e-105 384.8 427 57.6
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 8.9e-104 381.3 409 58.7
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.7e-102 377.1 411 59.1
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 3.2e-101 372.9 338 63.0
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 9.3e-101 371.3 404 58.4
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 4.3e-98 362.5 338 66.6
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 9.6e-98 361.3 338 64.8
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.3e-97 360.9 410 56.3
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 9.0e-96 354.8 433 54.0
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.4e-93 345.5 407 55.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.3e-91 340.1 410 54.4
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 3.0e-91 339.7 328 61.3
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.1e-89 333.6 444 51.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 4.8e-89 332.4 414 53.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 7.6e-87 325.1 350 60.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-79 300.8 411 47.9
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 9.3e-77 291.6 345 53.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-74 284.3 399 49.4
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 3.3e-74 283.1 419 46.5
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 6.9e-72 275.4 347 50.7
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.0e-70 271.6 401 48.1
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.7e-70 270.8 393 49.6
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 9.3e-69 265.0 408 43.6
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.0e-62 245.0 413 43.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-62 244.2 246 64.2
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.2e-52 211.5 312 47.8
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.1e-52 210.7 211 59.2
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.6e-50 203.8 286 50.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 3.3e-50 203.4 248 51.6
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-48 198.4 194 57.2
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.1e-48 198.4 220 57.3
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.2e-47 194.9 225 56.0
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.0e-46 191.8 281 52.0
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.0e-46 191.8 281 52.0
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 3.6e-44 183.3 283 42.0
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.0e-43 179.9 345 42.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.4e-40 170.6 366 39.9
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.0e-35 153.7 392 34.7
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 8.8e-35 152.1 204 48.5
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.2e-31 141.7 348 38.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 2.5e-29 134.0 109 67.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 9.5e-29 132.1 106 67.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.6e-26 124.0 150 55.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.4e-24 118.2 246 32.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 9.2e-24 115.5 217 42.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.3e-14 85.1 118 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.8e-11 74.7 214 27.6
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 2.4e-08 64.3 123 39.0
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 6.6e-06 56.2 63 50.8


User provided reference genes

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