Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 4.7e-62 241.1 131 100.0
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 1.6e-30 136.3 144 61.1
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 2.4e-26 122.5 129 54.3
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 2.1e-22 109.4 123 55.3
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 8.1e-22 107.5 131 53.4
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 6.9e-21 104.4 155 45.8
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 3.8e-19 98.6 125 48.0
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 3.8e-19 98.6 124 46.0
Glyma.02G278700 Glycine max HOM05D009394 ORTHO05D002431 8.4e-19 97.4 117 46.2
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 4.2e-18 95.1 124 41.9
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 5.5e-18 94.7 118 55.1
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 6.0e-17 91.3 131 48.9
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 1.8e-16 89.7 131 48.1
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.0e-16 89.0 123 44.7
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 3.0e-16 89.0 124 45.2
Psat5g191400 Pisum sativum HOM05D009394 ORTHO05D002431 3.9e-16 88.6 124 45.2
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 5.1e-16 88.2 124 41.1
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 8.7e-16 87.4 118 47.5
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 3.3e-15 85.5 124 41.9
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 7.4e-15 84.3 119 43.7
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 1.6e-14 83.2 118 46.6
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 2.1e-14 82.8 124 44.4
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 3.7e-14 82.0 125 43.2
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 6.3e-14 81.3 131 41.2
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 8.2e-14 80.9 117 43.6
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 8.2e-14 80.9 80 57.5
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 1.1e-13 80.5 58 62.1
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 1.4e-13 80.1 124 40.3
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 1.4e-13 80.1 118 40.7
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 3.1e-13 79.0 125 40.0
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 5.3e-13 78.2 117 42.7
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 6.9e-13 77.8 75 61.3
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 9.0e-13 77.4 124 41.1
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 1.2e-12 77.0 67 62.7
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 1.2e-12 77.0 117 41.0
Glyma.07G232600 Glycine max HOM05D009394 ORTHO05D002431 2.6e-12 75.9 120 49.2
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 3.4e-12 75.5 124 38.7
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 7.6e-12 74.3 117 39.3
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 7.6e-12 74.3 117 39.3
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 7.6e-12 74.3 117 39.3
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 1.0e-11 73.9 124 39.5
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.3e-11 73.6 124 36.3
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 2.9e-11 72.4 65 55.4
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 8.4e-11 70.9 116 35.3
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 1.4e-10 70.1 65 56.9
Medtr3g436750 Medicago truncatula HOM05D009394 ORTHO05D002431 1.9e-10 69.7 122 46.7
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 1.9e-10 69.7 65 58.5
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 2.5e-10 69.3 61 55.7
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 5.5e-10 68.2 62 54.8
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 5.5e-10 68.2 58 58.6
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 9.3e-10 67.4 123 36.6
arahy.Tifrunner.gnm1.ann1.7K9SF4 Arachis hypogaea HOM05D033084 ORTHO05D002431 2.1e-09 66.2 68 55.9
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 3.5e-09 65.5 130 36.9
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 4.6e-09 65.1 125 33.6
arahy.Tifrunner.gnm1.ann1.48WV5B Arachis hypogaea HOM05D033084 ORTHO05D002431 6.1e-09 64.7 68 55.9
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 7.9e-09 64.3 125 37.6
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 1.3e-08 63.5 124 41.9
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 1.3e-08 63.5 124 41.9
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 1.8e-08 63.2 124 41.1
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 2.3e-08 62.8 59 57.6
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 5.1e-08 61.6 124 41.1
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 5.1e-08 61.6 124 41.1
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 5.1e-08 61.6 124 41.1
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 6.7e-08 61.2 58 58.6
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 6.7e-08 61.2 124 41.9
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 8.7e-08 60.8 116 44.0
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 8.7e-08 60.8 116 44.0
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 8.7e-08 60.8 116 44.0
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 1.5e-07 60.1 116 43.1
TPR.G24378 Trifolium pratense HOM05D012161 ORTHO05D002431 1.5e-07 60.1 105 37.1
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.9e-07 59.7 67 53.7
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.5e-07 59.3 36 72.2
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.5e-07 59.3 36 72.2
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 2.5e-07 59.3 36 72.2
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.5e-07 59.3 51 60.8
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 2.5e-07 59.3 37 73.0
CDE05G1218 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 3.3e-07 58.9 116 37.9
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 3.3e-07 58.9 87 46.0
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 4.3e-07 58.5 77 48.1
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 4.3e-07 58.5 67 47.8
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 4.3e-07 58.5 60 50.0
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 7.4e-07 57.8 37 70.3
CDE05G1734 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 7.4e-07 57.8 119 36.1
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 9.7e-07 57.4 116 31.0
Zm00001eb402300 Zea mays HOM05D002917 ORTHO05D002431 9.7e-07 57.4 116 33.6
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 1.3e-06 57.0 121 32.2
Migut.N02378 Erythranthe guttata HOM05D009394 ORTHO05D002431 2.2e-06 56.2 60 48.3
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 2.2e-06 56.2 51 56.9
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 3.7e-06 55.5 117 42.7
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 4.8e-06 55.1 50 56.0
ClCG02G001020 Citrullus lanatus HOM05D002917 ORTHO05D002431 4.8e-06 55.1 121 31.4
Prupe.6G172200 Prunus persica HOM05D002917 ORTHO05D002431 8.2e-06 54.3 116 35.3


User provided reference genes

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