Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 0.0e+00 1263.8 654 100.0
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 0.0e+00 1178.3 654 92.4
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 0.0e+00 1092.0 654 86.1
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 0.0e+00 1088.2 652 86.0
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 0.0e+00 1075.8 603 91.2
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 0.0e+00 1075.1 653 84.7
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 7.6e-302 1040.0 654 82.3
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.0e-298 1029.6 650 81.4
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.0e-286 988.8 693 75.9
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 7.6e-286 986.9 693 76.0
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 8.7e-282 973.4 654 80.1
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 8.4e-269 930.2 655 73.9
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.2e-268 928.3 655 72.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 3.3e-265 918.3 657 73.2
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.6e-264 916.0 655 73.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.6e-264 916.0 655 72.8
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 3.1e-263 911.8 655 71.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.1e-263 911.8 655 72.4
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.3e-261 906.4 660 71.1
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 5.0e-261 904.4 657 72.0
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.1e-260 903.3 655 71.6
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.1e-259 899.0 654 72.2
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.7e-259 898.7 660 70.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.0e-258 896.7 657 71.4
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.3e-258 896.3 655 70.8
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.8e-258 896.0 655 71.3
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.0e-258 895.2 653 71.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 6.7e-258 894.0 655 71.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.5e-257 892.9 658 69.3
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 4.3e-257 891.3 655 71.5
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 9.7e-257 890.2 656 69.5
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.6e-256 889.4 655 71.8
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 8.2e-256 887.1 658 69.0
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.3e-255 884.4 660 70.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 9.1e-255 883.6 658 70.8
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.0e-254 882.5 659 68.7
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 3.4e-254 881.7 657 68.9
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.0e-253 880.2 659 70.6
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.3e-253 879.8 658 68.5
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.7e-253 879.4 654 69.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 3.8e-253 878.2 658 68.8
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 5.0e-253 877.9 660 68.5
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 5.0e-253 877.9 654 69.0
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.4e-252 876.3 655 69.8
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.2e-251 873.2 660 68.0
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.2e-251 873.2 654 69.1
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 2.0e-249 865.9 657 68.5
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 3.3e-249 865.1 693 66.2
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 9.7e-249 863.6 643 69.1
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.2e-248 862.4 660 70.0
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.8e-248 862.1 655 67.9
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 6.9e-247 857.4 657 67.9
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 2.6e-246 855.5 655 68.7
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.6e-246 855.5 660 67.4
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.6e-246 855.5 656 68.0
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 3.4e-246 855.1 649 68.0
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.7e-245 852.8 657 67.7
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 6.5e-245 850.9 655 67.5
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.1e-244 850.1 656 67.7
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 3.6e-243 845.1 657 67.4
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.8e-242 842.8 661 66.7
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.8e-242 842.8 641 67.4
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.8e-242 842.8 658 66.4
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 1.3e-240 836.6 643 67.3
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.3e-240 834.3 656 66.0
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.8e-239 832.8 654 66.2
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 4.1e-239 831.6 663 66.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 7.0e-239 830.9 655 68.1
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.5e-237 824.3 646 66.1
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.5e-236 823.2 656 64.9
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.9e-236 822.8 611 69.7
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.1e-235 819.3 658 65.5
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 6.7e-234 814.3 724 62.0
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 4.4e-233 811.6 661 64.8
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.7e-232 809.7 689 64.4
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 7.0e-231 804.3 644 66.5
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 5.0e-229 798.1 587 70.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 9.4e-228 793.9 657 63.9
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.2e-227 793.5 664 63.0
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.2e-227 793.5 584 70.7
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.2e-224 782.7 616 66.1
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 3.5e-222 775.4 660 64.2
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 4.5e-222 775.0 657 66.1
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.4e-218 763.5 592 68.9
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.1e-215 753.8 665 59.8
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 4.0e-210 735.3 865 50.3
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 6.4e-208 728.0 658 60.0
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.4e-199 700.3 657 56.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 6.0e-198 694.9 684 57.5
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 5.4e-191 671.8 847 48.3
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.9e-186 654.4 570 61.6
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.2e-184 649.8 664 53.9
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 2.1e-182 643.3 508 65.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.8e-179 632.9 477 70.6
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 7.1e-167 591.7 476 65.3
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.7e-166 589.7 580 55.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 4.6e-166 589.0 490 63.7
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.1e-165 585.5 601 55.7
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-140 503.8 436 60.8
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 4.8e-123 446.0 438 55.9
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.6e-102 377.9 345 58.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.6e-102 376.7 361 55.7
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.0e-101 375.2 281 74.0
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.6e-81 308.1 237 63.7
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.2e-78 298.5 432 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.1e-77 293.9 411 42.8
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 1.1e-74 285.4 199 73.4
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.6e-71 273.1 203 69.0
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 6.8e-69 266.2 177 73.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.3e-59 235.3 373 41.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.4e-58 231.9 168 67.3
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 9.3e-58 229.2 142 84.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.6e-54 218.4 250 55.2
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.9e-42 178.3 137 67.2
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-40 172.6 399 32.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 3.9e-40 170.6 289 42.9
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.4e-37 161.4 170 54.7
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.9e-35 154.5 147 57.8
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.6e-33 148.7 155 56.8
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.3e-32 145.6 89 76.4
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.1e-31 142.5 97 72.2
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 2.5e-31 141.4 89 84.3
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.6e-30 138.7 94 71.3
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 8.2e-30 136.3 79 83.5
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 4.1e-29 134.0 94 71.3
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 9.0e-29 132.9 174 46.0
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 3.8e-27 127.5 90 65.6
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 8.5e-27 126.3 96 64.6
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.0e-24 119.4 161 41.6
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 3.9e-24 117.5 83 71.1
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 8.8e-24 116.3 186 40.3
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 2.0e-23 115.2 65 90.8
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 5.3e-21 107.1 148 48.6
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 2.2e-19 101.7 195 36.4
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.4e-18 99.0 90 60.0
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.7e-17 94.0 55 85.5
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 6.7e-16 90.1 72 63.9
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 1.4e-13 82.4 72 68.1
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 4.1e-13 80.9 61 70.5
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-13 80.1 72 58.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 4.5e-12 77.4 49 73.5
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 4.5e-12 77.4 49 73.5
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 2.5e-10 71.6 59 59.3
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 8.8e-08 63.2 65 46.2


User provided reference genes

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