Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 3615.5 1806 100.0
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 3411.3 1806 94.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 3390.1 1820 92.6
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 3348.1 1806 92.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 3177.1 1803 87.6
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3124.3 1814 86.1
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 3107.0 1807 85.6
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 3099.3 1806 85.4
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3081.6 1807 84.9
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3053.8 1808 83.9
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3035.7 1847 82.2
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2978.7 1807 82.8
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2666.0 1932 70.1
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2648.2 1846 71.9
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2618.2 1823 71.1
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2599.7 1927 68.6
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2596.2 1831 70.4
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2589.7 1821 71.0
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2584.3 1825 70.7
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2583.1 1825 69.9
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2580.8 1821 70.3
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2579.7 1792 71.9
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2579.7 1821 70.0
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2577.4 1821 70.0
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2575.4 1830 69.4
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2570.8 1828 70.2
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2564.3 1833 68.9
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2555.8 1822 69.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2549.2 1839 68.5
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2533.1 1851 67.9
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2521.5 1886 66.6
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2512.6 1821 68.9
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2493.8 1962 65.5
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2486.4 1892 67.4
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2482.6 1821 67.5
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2475.7 1821 67.7
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2469.5 1822 67.5
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2461.8 1821 67.3
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2444.8 1942 64.4
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2442.2 1699 70.9
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2417.1 1941 63.7
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2402.1 1821 67.4
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2370.5 1830 65.6
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2369.7 1818 66.0
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2364.7 1826 64.8
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2358.9 1818 65.3
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2354.7 1818 65.6
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2335.1 1817 64.0
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2332.4 1825 65.0
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2324.7 1724 66.6
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2323.5 1822 64.3
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2322.4 1811 63.9
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2318.1 1822 64.1
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2317.3 1588 71.6
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2292.3 1825 63.5
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2291.2 1821 64.0
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2262.3 1820 62.6
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2255.7 1937 59.7
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2252.6 1696 67.3
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2248.8 1825 62.0
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2241.5 1828 62.4
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2240.3 1825 62.6
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2239.9 1824 62.3
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2234.1 1823 62.3
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2233.4 1821 62.5
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2228.8 1827 62.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2218.0 1726 65.8
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2201.0 1850 61.7
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2200.2 1829 61.6
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2178.7 1821 61.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2177.5 1839 61.0
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2175.6 1844 61.1
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2174.8 1829 61.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2171.0 1824 60.8
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2168.7 1822 61.3
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2152.5 1860 60.1
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2144.4 1449 73.5
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2135.1 1858 60.1
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2101.6 1820 59.6
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2099.3 1835 58.0
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2094.7 1843 59.8
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2050.4 1774 61.7
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2038.5 1839 58.8
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1987.6 1466 68.8
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1799.3 1519 61.2
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1756.5 1209 71.5
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1711.4 1213 68.8
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1651.3 1751 51.5
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1633.2 1327 63.1
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1545.0 963 79.9
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1540.4 1403 58.0
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1455.3 1939 43.4
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1427.5 1789 44.7
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1412.1 1935 42.6
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1355.5 1050 65.0
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1340.9 1348 55.4
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1218.8 933 64.3
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1169.1 785 74.0
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1164.4 897 63.4
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1163.7 1214 52.1
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1162.1 1841 38.8
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1156.0 1150 54.4
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 4.6e-309 1065.4 918 63.0
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 6.5e-279 965.3 1663 38.7
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 6.5e-279 965.3 909 56.7
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 4.0e-252 876.3 815 56.1
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 6.6e-231 805.8 726 57.6
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 4.7e-229 799.7 634 63.4
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-222 778.1 516 72.9
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.6e-219 767.3 879 47.0
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 5.6e-214 749.6 516 72.3
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.4e-204 718.4 511 68.7
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.1e-204 717.2 625 58.1
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.2e-185 653.7 881 47.3
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 9.4e-185 652.5 1064 39.0
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.0e-183 649.0 520 60.4
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-173 615.5 566 60.4
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.5e-171 607.1 892 41.0
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.4e-158 564.3 731 44.9
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 3.1e-156 557.8 397 68.5
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 5.2e-151 540.4 295 90.8
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 7.8e-147 526.6 434 62.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.2e-139 502.7 421 65.1
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 3.5e-139 501.1 327 74.6
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 2.9e-133 481.5 439 57.6
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.4e-124 452.6 535 46.7
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 6.0e-123 447.2 312 71.8
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 5.1e-122 444.1 366 60.4
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 1.1e-121 443.0 357 67.2
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 7.6e-118 430.3 514 46.7
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 3.4e-110 404.8 839 34.6
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.8e-103 382.5 311 60.8
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 4.5e-102 377.9 393 52.9
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 9.9e-102 376.7 255 74.1
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.4e-100 372.1 374 51.9
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.2e-100 371.3 408 54.4
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 2.7e-99 368.6 338 56.8
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.0e-85 323.6 809 30.2
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-83 316.6 186 83.3
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 7.0e-63 247.7 183 72.1
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 4.5e-62 245.0 142 85.9
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 4.7e-59 235.0 164 67.7
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 2.7e-51 209.1 122 80.3
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.2e-44 185.3 230 43.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 5.7e-41 174.9 230 41.7
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 1.4e-39 170.2 126 62.7
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 2.7e-38 166.0 109 78.0
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 3.5e-38 165.6 144 60.4
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.1e-36 160.6 169 50.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 5.5e-36 158.3 86 87.2
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 9.5e-36 157.5 104 78.8
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 2.3e-34 152.9 101 73.3
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 9.8e-33 147.5 115 65.2
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 2.8e-32 146.0 452 25.9
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 2.4e-31 142.9 224 36.6
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.2e-30 140.6 158 44.9
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.6e-30 140.2 154 49.4
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 4.5e-30 138.7 109 71.6
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 5.0e-29 135.2 124 56.5
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.1e-28 134.0 300 32.3
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.3e-26 126.3 103 63.1
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 3.1e-26 125.9 163 42.3
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.0e-26 125.6 204 36.8
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 9.8e-25 120.9 178 41.6
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.3e-24 120.6 107 57.9
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 6.0e-22 111.7 124 43.5
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 2.3e-21 109.8 143 51.7
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.9e-20 106.7 54 85.2
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 9.5e-20 104.4 76 64.5
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 3.6e-19 102.4 121 48.8
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 3.1e-18 99.4 86 52.3
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 5.2e-18 98.6 124 43.5
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 6.8e-18 98.2 74 60.8
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 5.8e-17 95.1 71 71.8
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 4.9e-16 92.0 107 45.8
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 7.8e-14 84.7 58 75.9
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 1.3e-13 84.0 75 53.3
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.7e-11 75.5 102 42.2
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 5.8e-09 68.6 75 42.7
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 4.1e-07 62.4 60 56.7
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 9.2e-07 61.2 70 50.0
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 1.6e-06 60.5 46 73.9
Lsat_1_v5_gn_1_119241 Lactuca sativa HOM05D003492 ORTHO05D016080 2.7e-06 59.7 67 52.2


User provided reference genes

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