Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 0.0e+00 1441.0 727 100.0
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 0.0e+00 1119.4 638 88.4
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 0.0e+00 1087.4 735 76.6
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 4.0e-304 1047.7 735 74.6
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 2.9e-302 1041.6 741 74.8
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 3.0e-299 1031.6 748 73.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 2.9e-246 855.5 516 83.9
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 6.8e-243 844.3 738 58.0
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.8e-241 839.0 737 58.5
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.5e-237 826.6 742 58.6
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 5.4e-224 781.6 740 55.1
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 3.9e-222 775.4 578 71.1
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 4.7e-220 768.5 738 53.5
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.3e-219 766.1 741 54.5
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 3.7e-217 758.8 745 54.2
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 6.4e-217 758.1 739 53.6
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 9.2e-216 754.2 746 53.4
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.1e-213 747.3 743 53.7
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.8e-212 742.7 743 53.4
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 9.9e-210 734.2 734 53.3
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 2.1e-207 726.5 807 50.1
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.8e-207 724.5 734 52.7
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.6e-206 721.1 734 52.6
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 8.1e-204 714.5 742 51.3
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.4e-203 713.8 663 55.8
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.8e-203 713.4 742 51.3
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 4.0e-203 712.2 737 52.6
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 3.8e-201 705.7 707 53.5
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 8.4e-201 704.5 736 51.8
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 1.4e-200 703.7 746 51.9
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.4e-200 703.0 743 52.2
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 4.2e-200 702.2 736 53.0
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 8.7e-198 694.5 757 49.3
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 5.6e-197 691.8 423 83.0
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.1e-196 689.9 750 52.1
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 6.2e-196 688.3 722 50.1
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 5.3e-195 685.3 745 49.7
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 9.3e-192 674.5 739 49.0
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.7e-190 670.2 740 47.6
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.4e-187 660.6 741 47.8
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 7.6e-186 654.8 741 47.5
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 9.9e-186 654.4 733 50.3
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 8.4e-185 651.4 772 48.1
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 1.4e-184 650.6 744 48.9
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 2.4e-184 649.8 773 46.4
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.4e-184 649.8 803 45.7
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.0e-182 644.4 716 49.2
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 5.1e-182 642.1 728 47.9
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.3e-180 637.5 738 45.7
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.3e-180 637.5 733 48.3
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.6e-180 637.1 747 46.9
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 3.7e-180 636.0 741 48.3
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.4e-179 634.0 748 45.5
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 2.0e-178 630.2 678 50.1
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 5.8e-178 628.6 745 45.2
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 6.4e-177 625.2 714 48.3
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 1.4e-176 624.0 751 45.1
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.9e-176 623.6 797 44.0
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 2.1e-175 620.2 743 44.3
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.0e-174 617.8 750 46.8
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 5.1e-174 615.5 770 46.0
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 8.7e-174 614.8 780 43.2
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.4e-171 607.4 744 45.8
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 7.6e-170 601.7 736 46.1
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 7.6e-170 601.7 750 44.7
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.4e-168 597.4 732 46.2
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.2e-168 595.9 699 49.2
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.3e-164 584.3 709 44.0
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.3e-164 584.3 726 46.1
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.0e-161 574.7 707 43.7
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.1e-160 571.2 748 43.9
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 2.5e-160 570.1 739 42.5
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 5.5e-160 568.9 733 44.5
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 2.3e-158 563.5 751 43.4
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.0e-158 563.1 737 44.0
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 5.1e-158 562.4 754 44.3
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 3.3e-157 559.7 713 43.5
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.6e-154 550.1 710 43.8
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 3.4e-154 549.7 710 43.7
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 2.1e-151 540.4 719 42.3
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 3.9e-150 536.2 592 48.3
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.4e-147 527.7 746 40.5
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.0e-138 497.3 672 40.8
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 9.4e-136 488.4 351 72.6
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 8.0e-135 485.3 370 68.6
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.4e-126 458.0 488 50.8
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 2.3e-118 430.6 550 43.6
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.5e-117 427.9 553 45.6
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.0e-117 427.6 733 37.4
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 3.4e-117 426.8 546 45.4
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.2e-111 408.3 451 49.0
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 7.5e-109 399.1 581 39.8
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 7.5e-109 399.1 348 55.2
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 2.9e-108 397.1 435 48.5
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 3.9e-105 386.7 347 56.2
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.7e-97 361.3 553 40.1
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 3.3e-96 357.1 707 37.9
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.4e-91 341.7 394 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.7e-89 334.7 694 33.4
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 3.6e-87 327.0 711 35.4
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 8.1e-87 325.9 348 49.1
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 8.9e-86 322.4 365 49.0
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.4e-83 315.1 335 49.6
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 2.4e-83 314.3 811 29.8
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.4e-83 313.2 293 54.6
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.1e-80 305.4 502 39.6
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.1e-78 297.4 695 29.5
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.3e-71 275.4 871 26.3
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 7.6e-69 266.2 163 80.4
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 9.3e-67 259.2 257 53.7
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 6.9e-62 243.0 254 49.6
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.2e-61 242.3 195 60.5
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.7e-52 211.8 160 62.5
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 8.4e-52 209.5 245 47.8
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.9e-51 208.4 892 22.9
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 3.9e-49 200.7 160 60.0
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 3.9e-49 200.7 275 42.2
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 5.7e-48 196.8 269 43.1
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.5e-43 181.4 136 64.0
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.6e-24 118.2 111 51.4
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.1e-22 112.8 98 59.2
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 2.4e-22 111.7 151 44.4
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 7.2e-19 100.1 162 37.7
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.7e-13 81.6 606 21.9
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 5.0e-12 77.4 59 71.2
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 4.2e-11 74.3 170 31.2
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 1.4e-09 69.3 177 29.9
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.5e-08 65.9 35 74.3
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 5.7e-08 63.9 339 23.0
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.8e-06 58.9 162 29.0
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 3.1e-06 58.2 139 34.5


User provided reference genes

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