Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g082010 Medicago truncatula HOM05D004319 ORTHO05D035081 3.7e-54 214.5 103 100.0
Ca_05939_v3 Cicer arietinum L. HOM05D004319 ORTHO05D005433 3.4e-15 85.1 148 39.2
Medtr5g082000 Medicago truncatula HOM05D004319 ORTHO05D005433 9.9e-15 83.6 148 37.8
Lalb_Chr20g0116571 Lupinus albus HOM05D004319 ORTHO05D005433 2.2e-14 82.4 148 38.5
Psat2g034600 Pisum sativum HOM05D004319 ORTHO05D005433 2.2e-14 82.4 148 37.8
Psat5g126960 Pisum sativum HOM05D004319 ORTHO05D005433 2.2e-14 82.4 148 37.2
Glyma.18G029500 Glycine max HOM05D004319 ORTHO05D005433 1.4e-13 79.7 148 37.2
Lalb_Chr15g0084221 Lupinus albus HOM05D004319 ORTHO05D005433 1.4e-13 79.7 148 37.8
Medtr3g070190 Medicago truncatula HOM05D004319 ORTHO05D005433 1.4e-13 79.7 148 36.5
Phvul.001G241100 Phaseolus vulgaris HOM05D004319 ORTHO05D005433 1.4e-13 79.7 148 37.2
VMungo1383G3192 Vigna mungo HOM05D004319 ORTHO05D005433 1.9e-13 79.3 148 37.2
Ca_17153_v3 Cicer arietinum L. HOM05D004319 ORTHO05D005433 2.4e-13 79.0 148 36.5
Dinv34417 Davidia involucrata HOM05D004319 ORTHO05D005433 4.2e-13 78.2 119 42.0
Glyma.11G227900 Glycine max HOM05D004319 ORTHO05D005433 5.4e-13 77.8 148 36.5
TPR.G16290 Trifolium pratense HOM05D004319 ORTHO05D005433 5.4e-13 77.8 144 38.2
Lj6g0024956 Lotus japonicus HOM05D004319 ORTHO05D005433 1.2e-12 76.6 148 35.8
TPR.G19852 Trifolium pratense HOM05D004319 ORTHO05D005433 2.7e-12 75.5 144 37.5
Glyma.14G061600 Glycine max HOM05D004319 ORTHO05D005433 1.0e-11 73.6 148 35.8
PSO339G4101 Papaver somniferum HOM05D004319 ORTHO05D005433 1.0e-11 73.6 144 36.8
PSO801G0608 Papaver somniferum HOM05D004319 ORTHO05D005433 1.0e-11 73.6 144 36.8
Nitab4.5_0004338g0100 Nicotiana tabacum HOM05D004319 ORTHO05D005433 1.3e-11 73.2 144 38.2
Lj8C71T5 Lonicera japonica HOM05D004319 ORTHO05D005433 1.7e-11 72.8 144 35.4
CiPaw.01G296400 Carya illinoinensis HOM05D004319 ORTHO05D005433 3.0e-11 72.0 135 35.6
Nitab4.5_0000051g0230 Nicotiana tabacum HOM05D004319 ORTHO05D005433 3.9e-11 71.6 144 34.7
Nitab4.5_0004737g0040 Nicotiana tabacum HOM05D004319 ORTHO05D005433 3.9e-11 71.6 144 34.7
TAR369G0377 Trochodendron aralioides HOM05D004319 ORTHO05D005433 3.9e-11 71.6 144 34.7
TAR623G1287 Trochodendron aralioides HOM05D004319 ORTHO05D005433 3.9e-11 71.6 144 35.4
Glyma.02G254900 Glycine max HOM05D004319 ORTHO05D005433 5.1e-11 71.2 148 35.1
Potri.010G192000 Populus trichocarpa HOM05D004319 ORTHO05D005433 5.1e-11 71.2 144 37.5
Sabra10G0147700 Salix brachista HOM05D004319 ORTHO05D005433 5.1e-11 71.2 144 37.5
Lsat_1_v5_gn_2_121560 Lactuca sativa HOM05D004319 ORTHO05D005433 6.6e-11 70.9 137 35.0
PGSC0003DMG400027182 Solanum tuberosum HOM05D004319 ORTHO05D005433 6.6e-11 70.9 144 37.5
HanXRQChr07g0202471 Helianthus annuus HOM05D004319 ORTHO05D005433 8.7e-11 70.5 144 34.0
Manes.07G126300 Manihot esculenta HOM05D004319 ORTHO05D005433 8.7e-11 70.5 144 36.1
Nn2g14829 Nelumbo nucifera HOM05D004319 ORTHO05D005433 8.7e-11 70.5 144 34.7
Actinidia29683 Actinidia chinensis HOM05D004319 ORTHO05D005433 1.1e-10 70.1 144 34.7
MSTRG.8969 Avicennia marina HOM05D004319 ORTHO05D005433 1.1e-10 70.1 143 35.7
HanXRQChr14g0460011 Helianthus annuus HOM05D004319 ORTHO05D005433 1.1e-10 70.1 144 34.0
Duzib106G1285 Durio zibethinus HOM05D004319 ORTHO05D005433 1.5e-10 69.7 144 34.7
ECA232G0842 Erigeron canadensis HOM05D004319 ORTHO05D005433 1.5e-10 69.7 144 33.3
ECA238G0079 Erigeron canadensis HOM05D004319 ORTHO05D005433 1.5e-10 69.7 144 33.3
Ah.15g099780 Amaranthus hybridus HOM05D004319 ORTHO05D005433 1.9e-10 69.3 144 34.0
CAN.G255.4 Capsicum annuum HOM05D004319 ORTHO05D005433 1.9e-10 69.3 144 34.0
Gorai.011G283100 Gossypium raimondii HOM05D004319 ORTHO05D005433 1.9e-10 69.3 144 34.0
Solyc05g052690.4 Solanum lycopersicum HOM05D004319 ORTHO05D005433 1.9e-10 69.3 144 36.8
Sopen05g031210 Solanum pennellii HOM05D004319 ORTHO05D005433 1.9e-10 69.3 144 36.8
GSVIVG01016359001 Vitis vinifera HOM05D004319 ORTHO05D005433 1.9e-10 69.3 144 34.7
EL10Ac7g16137 Beta vulgaris HOM05D004319 ORTHO05D005433 2.5e-10 68.9 140 35.7
CANSAT56G2826 Cannabis sativa HOM05D004319 ORTHO05D005433 2.5e-10 68.9 144 34.7
Cpa.g.sc19.202 Carica papaya HOM05D004319 ORTHO05D005433 2.5e-10 68.9 144 34.7
Cfa001356 Carpinus fangiana HOM05D004319 ORTHO05D005433 2.5e-10 68.9 144 34.7
Duzib114G0905 Durio zibethinus HOM05D004319 ORTHO05D005433 2.5e-10 68.9 144 34.0
Gohir.D10G245400 Gossypium hirsutum HOM05D004319 ORTHO05D005433 2.5e-10 68.9 144 34.0
Dinv20962 Davidia involucrata HOM05D004319 ORTHO05D005433 3.3e-10 68.6 144 34.0
Dinv20981 Davidia involucrata HOM05D004319 ORTHO05D005433 3.3e-10 68.6 144 34.0
Gohir.A13G016400 Gossypium hirsutum HOM05D004319 ORTHO05D005433 3.3e-10 68.6 144 34.0
Gorai.013G019400 Gossypium raimondii HOM05D004319 ORTHO05D005433 3.3e-10 68.6 144 34.0
Nn1g00865 Nelumbo nucifera HOM05D004319 ORTHO05D005433 3.3e-10 68.6 144 34.0
Thecc.04G298200 Theobroma cacao HOM05D004319 ORTHO05D005433 3.3e-10 68.6 144 34.0
CiPaw.02G190500 Carya illinoinensis HOM05D004319 ORTHO05D005433 4.3e-10 68.2 144 34.0
DCAR_032139 Daucus carota HOM05D004319 ORTHO05D005433 4.3e-10 68.2 148 33.8
MD07G1215300 Malus domestica HOM05D004319 ORTHO05D005433 4.3e-10 68.2 149 33.6
Nitab4.5_0002100g0070 Nicotiana tabacum HOM05D004319 ORTHO05D005433 4.3e-10 68.2 144 37.5
Rhsim09G0172500 Rhododendron simsii HOM05D004319 ORTHO05D005433 4.3e-10 68.2 144 34.0
Thecc.10G025300 Theobroma cacao HOM05D004319 ORTHO05D005433 4.3e-10 68.2 144 34.0
Solyc11g013440.2 Solanum lycopersicum HOM05D004319 ORTHO05D005433 5.6e-10 67.8 144 33.3
Sopen11g008430 Solanum pennellii HOM05D004319 ORTHO05D005433 5.6e-10 67.8 144 33.3
Aqoxy2G03884 Aquilegia oxysepala HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 33.3
CSS0043457 Camellia sinensis var. sinensis HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 34.0
AUR62001677 Chenopodium quinoa HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 33.3
AUR62020103 Chenopodium quinoa HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 33.3
Eucgr.B01698 Eucalyptus grandis HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 34.0
Eucgr.B02106 Eucalyptus grandis HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 34.0
Gohir.D13G017500 Gossypium hirsutum HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 33.3
MD01G1148100 Malus domestica HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 35.4
Peaxi162Scf00957g00227 Petunia axillaris HOM05D004319 ORTHO05D005433 7.3e-10 67.4 144 33.3
EL10Ac7g16132 Beta vulgaris HOM05D004319 ORTHO05D005433 9.6e-10 67.0 144 34.0
ClCG11G006300 Citrullus lanatus HOM05D004319 ORTHO05D005433 9.6e-10 67.0 144 34.0
MELO3C008285.2 Cucumis melo HOM05D004319 ORTHO05D005433 9.6e-10 67.0 144 34.0
PGSC0003DMG400027787 Solanum tuberosum HOM05D004319 ORTHO05D005433 9.6e-10 67.0 144 36.1
COL.COLO4_25650 Corchorus olitorius HOM05D004319 ORTHO05D005433 1.3e-09 66.6 144 33.3
CsaV3_6G001680 Cucumis sativus L. HOM05D004319 ORTHO05D005433 1.3e-09 66.6 144 33.3
Gohir.A10G233100 Gossypium hirsutum HOM05D004319 ORTHO05D005433 1.6e-09 66.2 144 33.3
ATR1127G008 Amborella trichopoda HOM05D004319 ORTHO05D005433 2.1e-09 65.9 144 31.9
Actinidia13922 Actinidia chinensis HOM05D004319 ORTHO05D005433 2.8e-09 65.5 144 34.0
CDE04G2342 Ceratophyllum demersum HOM05D004319 ORTHO05D005433 2.8e-09 65.5 144 33.3
Hma1.2p1_1409F.1_g281690 Hydrangea macrophylla HOM05D004319 ORTHO05D005433 2.8e-09 65.5 144 34.0
MBI06_g08188_MAGBIO Magnolia biondii HOM05D004319 ORTHO05D005433 2.8e-09 65.5 144 32.6
Prupe.2G247200 Prunus persica HOM05D004319 ORTHO05D005433 2.8e-09 65.5 144 34.7
PGR044G0899 Punica granatum HOM05D004319 ORTHO05D005433 2.8e-09 65.5 144 34.7
Sed0000856 Sechium edule HOM05D004319 ORTHO05D005433 3.6e-09 65.1 144 34.0
TWI73G0284 Tripterygium wilfordii HOM05D004319 ORTHO05D005433 3.6e-09 65.1 144 33.3
AT2G39990 Arabidopsis thaliana HOM05D004319 ORTHO05D005433 4.8e-09 64.7 145 32.4
Ciclev10032098m.g Citrus clementina HOM05D004319 ORTHO05D005433 4.8e-09 64.7 144 35.4
Sed0009807 Sechium edule HOM05D004319 ORTHO05D005433 6.2e-09 64.3 144 32.6
Cc02_g06830 Coffea canephora HOM05D004319 ORTHO05D005433 8.1e-09 63.9 144 32.6
TWI53G0350 Tripterygium wilfordii HOM05D004319 ORTHO05D005433 1.1e-08 63.5 144 34.0
BcaB01g03583 Brassica carinata HOM05D004319 ORTHO05D005433 1.8e-08 62.8 144 31.9
Dinv13745 Davidia involucrata HOM05D004319 ORTHO05D035081 1.8e-08 62.8 47 59.6
Aa31LG5G19620 Aethionema arabicum HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.9
AL4G37580 Arabidopsis lyrata HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.2
AL624U10010 Arabidopsis lyrata HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.2
BcaB02g09062 Brassica carinata HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.2
BcaC01g05449 Brassica carinata HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.9
C03p26570 Brassica napus HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.9
BolC3t15043H Brassica oleracea HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.9
Carub.0004s2213 Capsella rubella HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.9
Migut.F00700 Erythranthe guttata HOM05D004319 ORTHO05D005433 2.4e-08 62.4 143 34.3
Thhalv10016933m.g Eutrema salsugineum HOM05D004319 ORTHO05D005433 2.4e-08 62.4 144 31.9
SGA_v2.0_scaffold44G16706 Striga asiatica HOM05D004319 ORTHO05D005433 2.4e-08 62.4 143 34.3
Sc12g0000910 Simmondsia chinensis HOM05D004319 ORTHO05D005433 5.3e-08 61.2 144 31.2
A03p22410 Brassica napus HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 31.2
C04p07500 Brassica napus HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 30.6
BolC4t22368H Brassica oleracea HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 30.6
BraA03t11469Z Brassica rapa HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 31.2
CDE02G2318 Ceratophyllum demersum HOM05D004319 ORTHO05D005433 6.9e-08 60.8 86 40.7
FvH4_7g24110 Fragaria vesca HOM05D004319 ORTHO05D005433 6.9e-08 60.8 157 31.8
FAN01G1285 Fragaria x ananassa HOM05D004319 ORTHO05D005433 6.9e-08 60.8 157 31.8
FAN06G4692 Fragaria x ananassa HOM05D004319 ORTHO05D005433 6.9e-08 60.8 157 32.5
Sp4g22300 Schrenkiella parvula HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 31.2
Hund18856 Selenicereus undatus HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 31.2
THA.LOC104809927 Tarenaya hassleriana HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 31.9
Zm00001eb267470 Zea mays HOM05D004319 ORTHO05D005433 6.9e-08 60.8 144 30.6
A05p06430 Brassica napus HOM05D004319 ORTHO05D005433 9.0e-08 60.5 144 30.6
FAN10G3467 Fragaria x ananassa HOM05D004319 ORTHO05D005433 9.0e-08 60.5 157 31.8
Os05g0104800 Oryza sativa ssp. japonica HOM05D004319 ORTHO05D005433 9.0e-08 60.5 144 32.6
HPP92_018195 Vanilla planifolia HOM05D004319 ORTHO05D005433 1.2e-07 60.1 144 31.2
Oeu039013.1 Olea europaea HOM05D004319 ORTHO05D005433 1.5e-07 59.7 40 70.0
Atru.chr12.232 Acer truncatum HOM05D004319 ORTHO05D005433 2.0e-07 59.3 144 31.2
CARHR134940 Cardamine hirsuta HOM05D004319 ORTHO05D005433 2.0e-07 59.3 144 30.6
Manes.07G126500 Manihot esculenta HOM05D004319 ORTHO05D005433 2.0e-07 59.3 172 31.4
BraA05t19611Z Brassica rapa HOM05D004319 ORTHO05D005433 2.6e-07 58.9 144 29.9
THA.LOC104810078 Tarenaya hassleriana HOM05D004319 ORTHO05D005433 2.6e-07 58.9 144 31.2
Zm00001eb356180 Zea mays HOM05D004319 ORTHO05D005433 3.4e-07 58.5 144 31.2
SalBow6G1306 Salvia bowleyana HOM05D004319 ORTHO05D005433 4.5e-07 58.2 41 63.4
Oeu036042.1 Olea europaea HOM05D004319 ORTHO05D035081 7.6e-07 57.4 40 65.0
Oeu038001.1 Olea europaea HOM05D004319 ORTHO05D005433 7.6e-07 57.4 40 65.0
RcHm_v2.0_Chr1g0369531 Rosa chinensis HOM05D004319 ORTHO05D005433 1.3e-06 56.6 158 31.0
Haze_17192 Corylus avellana HOM05D004319 ORTHO05D005433 1.7e-06 56.2 136 34.6
Hma1.2p1_2079F.1_g313450 Hydrangea macrophylla HOM05D004319 ORTHO05D005433 1.7e-06 56.2 40 60.0
FAN03G2018 Fragaria x ananassa HOM05D004319 ORTHO05D005433 3.8e-06 55.1 157 30.6
SGA_v2.0_scaffold60G21025 Striga asiatica HOM05D004319 ORTHO05D005433 3.8e-06 55.1 40 62.5


User provided reference genes

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