Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 1.7e-70 269.2 136 100.0
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 2.4e-61 238.8 137 88.3
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.3e-54 216.5 136 80.9
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 4.9e-54 214.5 166 69.9
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 2.7e-52 208.8 135 77.8
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 1.7e-51 206.1 131 77.9
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 4.3e-50 201.4 130 75.4
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 7.6e-47 190.7 126 74.6
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 9.9e-47 190.3 128 74.2
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 8.4e-46 187.2 126 72.2
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 5.4e-45 184.5 130 70.0
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 1.2e-44 183.3 121 75.2
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 2.1e-44 182.6 173 57.2
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 2.7e-44 182.2 129 70.5
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 3.5e-44 181.8 126 70.6
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 6.0e-44 181.0 129 69.8
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 3.9e-43 178.3 126 69.8
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 8.7e-43 177.2 123 73.2
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.5e-42 176.4 127 69.3
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 1.5e-42 176.4 125 69.6
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 2.5e-42 175.6 124 67.7
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 4.3e-42 174.9 120 70.0
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 5.6e-42 174.5 121 71.9
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 7.4e-42 174.1 121 71.1
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 7.4e-42 174.1 120 69.2
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 7.4e-42 174.1 120 69.2
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 1.3e-41 173.3 120 70.0
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 2.8e-41 172.2 125 69.6
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.7e-41 171.8 123 70.7
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 4.8e-41 171.4 130 65.4
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 8.1e-41 170.6 121 68.6
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 1.1e-40 170.2 125 70.4
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.1e-40 170.2 123 69.9
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 1.4e-40 169.9 122 71.3
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 1.4e-40 169.9 126 67.5
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.4e-40 169.9 123 68.3
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 3.1e-40 168.7 129 68.2
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 3.1e-40 168.7 126 65.9
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 4.0e-40 168.3 121 67.8
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 4.0e-40 168.3 140 63.6
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 5.3e-40 167.9 122 70.5
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 9.0e-40 167.2 122 67.2
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 1.2e-39 166.8 120 68.3
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 1.2e-39 166.8 107 83.2
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.2e-39 166.8 123 65.9
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.2e-39 166.8 122 70.5
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 1.2e-39 166.8 126 66.7
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.2e-39 166.8 126 66.7
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 1.5e-39 166.4 128 65.6
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 1.5e-39 166.4 126 66.7
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 2.6e-39 165.6 126 66.7
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 2.6e-39 165.6 121 68.6
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 3.4e-39 165.2 132 62.9
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 3.4e-39 165.2 121 65.3
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 4.5e-39 164.9 126 66.7
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 7.6e-39 164.1 127 62.2
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 9.9e-39 163.7 112 74.1
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.9e-38 162.2 121 66.1
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 3.8e-38 161.8 126 65.1
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 4.9e-38 161.4 123 65.0
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 4.9e-38 161.4 125 60.8
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 1.1e-37 160.2 134 61.2
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.4e-37 159.1 106 69.8
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 2.4e-37 159.1 125 63.2
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 3.2e-37 158.7 125 63.2
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 5.5e-37 157.9 121 64.5
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 7.1e-37 157.5 128 60.9
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.2e-36 156.8 128 60.2
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.2e-36 156.8 128 59.4
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.2e-36 156.8 128 59.4
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.2e-36 156.8 128 59.4
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.2e-36 156.8 106 68.9
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.7e-36 155.6 128 59.4
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 3.5e-36 155.2 122 61.5
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 4.6e-36 154.8 138 59.4
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 4.6e-36 154.8 120 64.2
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 4.6e-36 154.8 126 61.9
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 6.0e-36 154.5 128 60.2
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 7.9e-36 154.1 123 61.0
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 7.9e-36 154.1 128 58.6
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 1.0e-35 153.7 127 60.6
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 1.0e-35 153.7 126 62.7
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 1.8e-35 152.9 121 60.3
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 5.1e-35 151.4 125 58.4
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 5.1e-35 151.4 128 57.8
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 8.7e-35 150.6 122 59.0
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.1e-34 150.2 128 57.8
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 1.9e-34 149.4 124 54.8
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 3.3e-34 148.7 100 73.0
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.3e-34 148.7 126 63.5
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.3e-33 146.7 126 57.9
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 9.0e-32 140.6 156 50.6
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 2.6e-31 139.0 120 59.2
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 3.2e-29 132.1 99 68.7
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 4.2e-29 131.7 99 67.7
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 4.6e-28 128.3 120 49.2
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 1.8e-27 126.3 117 53.0
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 8.7e-27 124.0 126 55.6
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 1.1e-26 123.6 118 50.8
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 3.3e-26 122.1 93 65.6
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 3.3e-26 122.1 105 56.2
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.6e-25 119.8 165 43.0
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 8.2e-25 117.5 99 58.6
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 1.1e-24 117.1 96 61.5
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.1e-24 115.2 97 55.7
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 1.5e-23 113.2 104 56.7
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 5.9e-23 111.3 106 55.7
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 5.9e-23 111.3 92 59.8
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 7.6e-23 110.9 97 53.6
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.2e-22 109.4 97 52.6
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 1.9e-21 106.3 106 46.2
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 6.1e-20 101.3 102 49.0
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 6.7e-19 97.8 88 56.8
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.7e-17 93.2 99 50.5
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 2.8e-17 92.4 78 57.7
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 9.1e-16 87.4 71 59.2
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 3.4e-15 85.5 90 54.4
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.3e-14 83.6 92 47.8
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 1.6e-12 76.6 112 38.4
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 1.3e-09 67.0 110 28.2
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 7.0e-08 61.2 54 57.4


User provided reference genes

Program Settings